PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G027700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 26076.2 Da PI: 4.9603 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.5e-18 | 53 | 100 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ Sevir.1G027700.1.p 53 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 100 57*****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-12 | 53 | 100 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.59E-19 | 53 | 112 | No hit | No description |
SMART | SM00380 | 3.7E-35 | 54 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-21 | 54 | 111 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-31 | 54 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.037 | 54 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MPEVEVSSPA SSGGTSSSPP LSPTEVGARR GGGSGGPEKR VRARDRDGGE KHPSYRGVRM 60 RAWGKWVSEI REPRKKSRIW LGTFPTPEMA ARAHDAAALV VKGPAAVLNF PEMAAALPRP 120 ASAAPRDVQA AAARAAAMEP ALPPAGPAAA AAASLQMPAP AAAGQQQDDE LEAIVELPRL 180 DEDAAELVTT VTAFGAAPFS FHDVATPASW CDPVWVDDAS GYVAAAHDDL FGFVDGDHGW 240 AQSVGALLWN M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-18 | 49 | 111 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G027700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004857 | 1e-106 | AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06. | |||
GenBank | AP014958 | 1e-106 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY258281 | 1e-106 | AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951387.1 | 1e-130 | ethylene-responsive transcription factor ERF038 | ||||
Swissprot | Q9LYD3 | 2e-49 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | K3YV92 | 1e-129 | K3YV92_SETIT; Uncharacterized protein | ||||
STRING | Si018188m | 1e-130 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-29 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G027700.1.p |
Publications ? help Back to Top | |||
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