PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.J004500.1.p | ||||||||
Common Name | LOC101767612, SETIT_020720mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 268aa MW: 29496.3 Da PI: 8.3953 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Seita.J004500.1.p 62 YTCTFCRREFRSAQALGGHMNVH 84 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.94E-6 | 59 | 89 | No hit | No description |
SMART | SM00355 | 0.0066 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.1E-5 | 62 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.157 | 62 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MEQMAKYYWG MLTAAAGSSS PRSYWPPPAH ATAAGEPSWE ELAFARDAAG HLGGCVWPPR 60 SYTCTFCRRE FRSAQALGGH MNVHRRDRAR LRQCASPDHD DAHKQQPSID IAPPAADHHH 120 QLLQLQESPL LRAKAAVSIS GPKSTCCDHQ IYSHDHQEAV ITTTTSPSYL STVVKESKNK 180 LVISIPAATI DDEDEVTVAA ERRKRRRVHQ QPEALLPLFF LRPLASSKSG AEHDAKVPKV 240 ITSPSSPNTL HLAARQEVDL ELRLALK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 4e-13 | 57 | 84 | 2 | 29 | superman protein |
2l1o_A | 4e-13 | 57 | 84 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 202 | 206 | RKRRR |
2 | 203 | 207 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.J004500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU973083 | 9e-74 | EU973083.1 Zea mays clone 393033 zinc finger, C2H2 type family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004987294.1 | 0.0 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | K3Z2F2 | 0.0 | K3Z2F2_SETIT; Uncharacterized protein | ||||
STRING | Si020720m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7845 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-28 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Seita.J004500.1.p |
Entrez Gene | 101767612 |