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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.9G537400.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
E2F/DP |
| Protein Properties |
Length: 499aa MW: 53303.1 Da PI: 9.8906 |
| Description |
E2F/DP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.9G537400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | E2F_TDP | 84.8 | 6.7e-27 | 241 | 327 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71
+++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
Seita.9G537400.1.p 241 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEftdpnnnieapdpenpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 327
689*******...*****999************************************************************.*******98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0042023 | Biological Process | DNA endoreduplication |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 499 aa
Download sequence Send
to blast |
MFSCVSSRLG RRRPAAPTGG LLARRPPSSR ETAKKPAATT KGRNAKQTAQ TKRKSEKIRV 60
PVSARSPDDF HLSLHFAPPL LLLLVALGFL QLCSPARSLP NSAPPIRARS PRVVMVSGVA 120
DNPDGGGGAP GAQLPPPPMG ARAALGTLPV SGGAAHSAST SGGSAGSPSS RSEQNAPDGA 180
GKGAAPGSAA AAVAASTPAS ETTFLRLNNL DINGDDAPSS QAPTSKKKKR GARAVGPDKG 240
NRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFTDPNNN IEAPDPENPN AQQYDEKNIR 300
RRVYDALNVL MAMDIISKDK KEIQWKGLPR TSISDIEDLK MELVGLKGRI EKKSAYLQEL 360
QDQYVGLQNL IQRNEQLYGS GNTPSGGVAL PFILVQTRPH ATVEVEISED MQLVHFDFNS 420
TPFELHDDSY VLKEMRFCGR EQHDSAQEMI SNGGEGSSMS NIYWQQVQHP GRPNNGTVGL 480
PSSPPIPGIL KGRVKHEH*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT065957 | 0.0 | BT065957.1 Zea mays full-length cDNA clone ZM_BFb0087C01 mRNA, complete cds. |
