PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G511700.1.p
Common NameLOC101785922, SETIT_036568mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 331aa    MW: 35503.7 Da    PI: 6.5171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G511700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.7e-14113164155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++ + + a+i+  A++Y+++L+
  Seita.9G511700.1.p 113 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 164
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.05E-14111168No hitNo description
SuperFamilySSF474592.62E-17112178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.904112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-14112168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MALEAVVFSQ AAAGHFGYGG RGDSPYWCDL GGLGDLCPGD YSWDQELDAW AAAPAVGDDW  60
EAASRADQSS DASTDQLLQG KKAASEPAAA VAAVRRKRRR AKVVKNKEEI ETQRMTHIAV  120
ERNRRRQMNE YLAVLRSLMP PSYAHRGDQA SIVGGAINYV RELEQLLQSL EVQKSIKNNR  180
GRSSTDAAGN SSPFAGFFSF PQYSTSPAHG GGCSSTSLGS SSNTSSSNAT TNSDASVADI  240
EVTMVEGHAS LKVLARRRPK QLLKLVTGLH QLRIPPLHLN MTTTADAMVL YTFSLKVEDG  300
SKMGSVEDIA TAVHEILGSI QQQEEETAVM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19599RKRRR
2113124RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G511700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420301e-107BT042030.1 Zea mays full-length cDNA clone ZM_BFb0114I01 mRNA, complete cds.
GenBankEU9613971e-107EU961397.1 Zea mays clone 235094 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985409.10.0transcription factor bHLH94
TrEMBLK4ACG10.0K4ACG1_SETIT; Uncharacterized protein
STRINGSi036568m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-70bHLH family protein