 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.9G511500.1.p |
| Common Name | LOC101785512, SETIT_036724mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 314aa MW: 34357.8 Da PI: 4.5133 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.9G511500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.2 | 7.9e-20 | 69 | 121 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++ eq+++Le++Fe +++++ ++++++A+ lgL+ rqV vWFqNrRa++k
Seita.9G511500.1.p 69 KRRLAMEQVRALERCFETDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWK 121
557899**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 127.5 | 5.6e-41 | 67 | 159 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrl+ eqv++LE++Fe+++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktk lE+d++aL++++dal+++ ++L++++++L++e+
Seita.9G511500.1.p 67 EKKRRLAMEQVRALERCFETDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKTLERDFAALRARHDALRADCDALRRDKDALAAEI 157
69**************************************************************************************999 PP
HD-ZIP_I/II 92 ke 93
+e
Seita.9G511500.1.p 158 RE 159
86 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MKRQSKRPAS SNESTEAGEK LAFAEDEAQA LTARNMEHDD AELDDVDDDE DELAGGRAAR 60
PACGLGEKKR RLAMEQVRAL ERCFETDNKL DPDRKARIAR DLGLQPRQVA VWFQNRRARW 120
KTKTLERDFA ALRARHDALR ADCDALRRDK DALAAEIREL RQKLSSRPET AVKLEEAVAN 180
EAAEERQATV GAAVCKDGSS DSDSSVVFND VEASPYSGAA FEQPGLLGFG PPFLDTSAAT 240
TGCSPLPMFE TKWQQGPTYP YDSYKAGGGY GFTEEWLASS DVIGSDGAVS FFSEEHASSL 300
NFGWCASGTE AWE*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX469925 | 0.0 | JX469925.1 Zea mays subsp. mays clone UT3181 HB-type transcription factor mRNA, partial cds. |
