PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G510100.2.p
Common NameSETIT_034076mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CAMTA
Protein Properties Length: 1024aa    MW: 113950 Da    PI: 5.2183
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G510100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.11.1e-5591253118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         ke ++rwl++ ei++iL+n++++++t e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een+
  Seita.9G510100.2.p   9 KEaQNRWLRPAEICEILKNYRNFRITPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENE 99 
                         5559*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrr+yw+Lee++ +ivlvhylevk
  Seita.9G510100.2.p 100 NFQRRSYWMLEEDFMHIVLVHYLEVK 125
                         ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143783.1724130IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-777125IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-4910124IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.8E-8434519IPR013783Immunoglobulin-like fold
CDDcd001022.57E-5434521No hitNo description
SuperFamilySSF812961.03E-18435520IPR014756Immunoglobulin E-set
PfamPF018335.5E-9437514IPR002909IPT domain
CDDcd002041.61E-12615727No hitNo description
SuperFamilySSF484034.82E-16626730IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-16629733IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.131635739IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.576635667IPR002110Ankyrin repeat
PROSITE profilePS500888.736668700IPR002110Ankyrin repeat
SMARTSM002480.013668697IPR002110Ankyrin repeat
SMARTSM002483500707736IPR002110Ankyrin repeat
SuperFamilySSF525401.89E-8840892IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.07841863IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.114842871IPR000048IQ motif, EF-hand binding site
PfamPF006120.0029843862IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0019864886IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.542865889IPR000048IQ motif, EF-hand binding site
PfamPF006121.5E-4867886IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MEDIEQILKE AQNRWLRPAE ICEILKNYRN FRITPEPPNR PPSGSLFLFD RKVLRYFRKD  60
GHNWRKKRDG KTVKEAHERL KSGSIDVLHC YYAHGEENEN FQRRSYWMLE EDFMHIVLVH  120
YLEVKGGKSS SRIRGHDDML QAARTDSPLS QLPSQTTEGE SSLSGQASEY EETESDIYSG  180
GAGYHPFSWM QQHENGGGPV MGASILSSYI PAPSVGNHQG FLATTTTTDF YSHGQDALPV  240
ALNEPGFGIA FDEADNQLDP SSLNGLVKPD QGVHRMAPPQ IADPSKQFPF TEGSGIESFT  300
FDEVYSNGLS IKDADTVGTD EESLWQLPGA ISSFPTEDSS QQNGRSLEEA INHPLLKTQS  360
SSLSDILKDS FKKNDSFTRW MSKELGEVDD SPIKSSSGVY WNSEDTDNII EASSRDQLDQ  420
FTVDPVVAQD QLFSIFDFSP SWAYAGSKTR VLITGRFLNS DEVQRCKWSC MFGEVEVPAE  480
ISADGTLRCY SPSHKPGRVP FYVTCSNRLA CSEIREFEFR PSNSQHIDGP TPHDIANKTY  540
LQMRLDDLLS LGQDEYQATV SNPTKDMIDL SKKISSLMTD NDSWSELLKL AGDNELATDD  600
KQDQFFENRV KEKLHIWLVH KAGDGGKGPS VLDEEGQGVL HLAAALGYDW AIRPTISAGV  660
SINFRDAHGW TALHWAAFCG RERTVVALIA LGAAPGALTD PTPDFPTGST PADLASANGY  720
KGISGFLAES SLTSHLQTLN LKEAMWSNAP EISGLPGIGD VTERKLSPLA GEGLLAGSMG  780
DSLGAVRNAT QAAARIYQVF RMQSFQRKQV VQYEDDNGAI SDDCALSLLS VKPSKPGQLD  840
PLHAAATRIQ NKYRGWKGRK EFLLIRQRII KIQAHVRGHQ VRKHYRKIIW SVGIVEKVIL  900
RWRRRGAGLR GFRSTEGAAE GTSSSGSDLI QNKPAEDDYD FLQQGRKQTE ERLQKALARV  960
KSMVQYPDAR DQYQRILNVV TKMQESQAMQ EKMLESSTDM DEGLAMSDFE ELWGDDMPMP  1020
GYI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G510100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985393.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLA0A368SUS50.0A0A368SUS5_SETIT; Uncharacterized protein
STRINGSi034076m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1