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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Seita.9G503700.1.p |
| Common Name | LOC101755544, SETIT_037255mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
HD-ZIP |
| Protein Properties |
Length: 240aa MW: 26406.6 Da PI: 7.0641 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.9G503700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.5 | 4.8e-18 | 58 | 111 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq ++Le F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
Seita.9G503700.1.p 58 KKRRLSDEQARQLEINFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 111
56689***********************************************99 PP
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| 2 | HD-ZIP_I/II | 107.8 | 8.2e-35 | 58 | 149 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
kkrrls+eq+++LE +F++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e +++++l+
Seita.9G503700.1.p 58 KKRRLSDEQARQLEINFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFSKLRAAHDAVVLQNCHLETELLKMKDRLA 148
9*************************************************************************************99987 PP
HD-ZIP_I/II 93 e 93
e
Seita.9G503700.1.p 149 E 149
5 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 240 aa
Download sequence Send
to blast |
MGCEEDERLL FPSFAFPAES FAEAATPGSG GEQKKARQRR RRKPRPVGEG EGGDEQAKKR 60
RLSDEQARQL EINFRKERKL ETPRKVQLAA ELGLDAKQVA VWFQNRRARH KSKLMEEEFS 120
KLRAAHDAVV LQNCHLETEL LKMKDRLAES EEEKRKLIAA AAAAAAAAAG GAGAGSSSPS 180
SSSFSTVTHH PAALVGQFGV EAEEAADLTY MSEYAYNSYM NMMDLAPNYF GSSVYDQFN*
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| Nucleic Localization
Signal ? help
Back to Top |
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| No. |
Start |
End |
Sequence |
| 1 | 38 | 44 | RRRRKPR |
| 2 | 40 | 60 | RRKPRPVGEGEGGDEQAKKRR |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT043163 | 0.0 | BT043163.2 Zea mays full-length cDNA clone ZM_BFc0114N11 mRNA, complete cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Gao S,Fang J,Xu F,Wang W,Chu C
Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
Plant Cell, 2016. 28(3): p. 680-95
[PMID:26977084]
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