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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.9G490500.1.p |
| Common Name | LOC101771356, SETIT_037608mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
YABBY |
| Protein Properties |
Length: 196aa MW: 21926.3 Da PI: 8.8718 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.9G490500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 55.2 | 3.1e-17 | 1 | 48 | 1 | 46 |
YABBY 1 advfssseqvCyvqCnfCntila..vsvPstslfkvvtvrCGhCtsll 46
+d++s+se++Cyv+C++Cnt+la v vP + l+ +vtv+CGhC +l
Seita.9G490500.1.p 1 MDLVSQSEHLCYVRCTYCNTVLAlqVGVPCKRLMDTVTVKCGHCNNLS 48
57899****************9744778*****************984 PP
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| 2 | YABBY | 95.2 | 1.5e-29 | 85 | 147 | 100 | 162 |
YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
l + +++ +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa
Seita.9G490500.1.p 85 PLASPTSDASPRMPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 147
4566677889****************************************************7 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 196 aa
Download sequence Send
to blast |
MDLVSQSEHL CYVRCTYCNT VLALQVGVPC KRLMDTVTVK CGHCNNLSYL SPRPPMVQPL 60
SPTDHHPLGP FQGPCNDCRR NQPMPLASPT SDASPRMPFV VKPPEKKHRL PSAYNRFMRE 120
EIQRIKAAKP DIPHREAFSM AAKNWAKCDP RCSTTVSTAT SNSAPEPRVV PAPQERAKEQ 180
VIESFDIFKQ IERSI*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB470268 | 0.0 | AB470268.1 Sorghum bicolor SbDL mRNA for DL related protein, complete cds. |
