PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G474600.2.p | ||||||||
Common Name | LOC101785509, SETIT_038797mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 237aa MW: 24339.9 Da PI: 5.3093 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00022 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Seita.9G474600.2.p 83 FTCNYCQRKFFSSQALGGHQNAH 105 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.18E-6 | 80 | 110 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MNSKEMCQEP CDELSEISSQ AASNTEASNS SGRVSLDLSL TVAAAAAAES STTDISNCNS 60 NRGSGGAQAE AAAVAAREPS RVFTCNYCQR KFFSSQALGG HQNAHRRERT LARRALRLDA 120 AAPYGYYADV ASLPLYGSGL YPIGIQAHAS PAARPEQQPR HGDDAAAARA AELKPARGLL 180 GPMPFFVGDD EVSFGWPGSF RPTAAAAVPA GGAALNSAGG AGDVLAGEEP DLTLRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G474600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985058.1 | 1e-170 | zinc finger protein 4 | ||||
Refseq | XP_022685589.1 | 1e-170 | zinc finger protein 4 | ||||
TrEMBL | K4AIT5 | 1e-169 | K4AIT5_SETIT; Uncharacterized protein | ||||
STRING | Si038797m | 1e-170 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 7e-16 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G474600.2.p |
Entrez Gene | 101785509 |