PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G470200.1.p
Common NameSETIT_033977mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HB-other
Protein Properties Length: 1180aa    MW: 132333 Da    PI: 6.6083
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G470200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.99.6e-152072557
                        SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                        t+ +++q++ Le+++   +yp+ +e+e+ A+ +gLt +qV++WF+ rR ke++
  Seita.9G470200.1.p 20 TKKSPQQIQMLEKFYSDVQYPKPDEMEQYATCVGLTYSQVRIWFKERRRKERR 72
                        66799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.9811373IPR001356Homeobox domain
SMARTSM003893.0E-151577IPR001356Homeobox domain
SuperFamilySSF466897.27E-141677IPR009057Homeodomain-like
CDDcd000865.06E-92063No hitNo description
Gene3DG3DSA:1.10.10.608.6E-152078IPR009057Homeodomain-like
PfamPF000465.2E-122072IPR001356Homeobox domain
SMARTSM005711.4E-5382441IPR018501DDT domain
PROSITE profilePS5082710.411382441IPR018501DDT domain
PfamPF027912.1E-8384436IPR018501DDT domain
PfamPF156122.7E-5664692IPR028942WHIM1 domain
PfamPF156132.9E-11784855IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1180 aa     Download sequence    Send to blast
MPPAQMVTNG LGAKRENAGT KKSPQQIQML EKFYSDVQYP KPDEMEQYAT CVGLTYSQVR  60
IWFKERRRKE RREMETIGSH MERQLSGRSS GPRTSSSSSS CNEAPMYGIS CSRPEFDSST  120
SVVGEENTVQ SQVLFPKDYI LRKIFRKDGP PLGSEFDPLP KSERDRIRDT TCHHSSQNQR  180
AVKKRKIIES TSQRSSVPYE DTVPVRKHGI GKGLMTVWHA MYSQSHNVEC QSGPNFIDET  240
GCLRSLRPFD DRDGLEDNGK TTQNQSMAQK KVDKRSKPPL NKRKVPCKRV TGPKEHPPMD  300
CHLSINKSES SELLTEQVTL VDDEELELSE LQAGPNPLRC SAHLSSSGRH GCPLCKDLLA  360
KFPPQSVKMK QPFSAKPWDS SPEMVKKLFQ VIRFVYTHFG TIDVHPFTFD EFAQAFHDKD  420
SLLLGEVHIG LLKLLLLNAE MGSDGVFVPR SSKDCRFLSF LNFVREQEFD VNFWIRSLNS  480
LTWVEILRQV LVASGFGSKQ HMLNRDFFNK EKNQMVKYGL RPRTLKGELF ALLSKAGSGG  540
LKVSVLAKSS EIVDLNVSGT LELEQLIYLT LSSDITLFEK IAPSAYRLRV DPQIKGKEDA  600
RSDSEDSGSV DDDEDASSSD DESNGSQKMN LPEHGDRIAR KKEQKNAHGS PNKCSEIDES  660
YPGERWLLGL MEGEYSDLSI DEKLDCLVAL IDIASGAGSV PRLEEPQRVL HNMPRAQPHQ  720
SGGKIKKSTK NLYRSSDESL NGPGNSYSLD CSRQGRSASR RNQDYITDSE RNDLSGVAHE  780
PQVVLLGSDR RYNSYWLFLG PCRADDPGHR RVYFESSEDG HWEVVDSPQE LLSLLSVLDS  840
RGTREAHLLA SMEKRQACLF EAMKKHVEGG NAIGLPASSD SFRSETSTGD GASPKTSSVS  900
GASPVSDVEN ASVPPDLEDS NLDSSSAIVI ENGKRGDERI LMWDRLQAFD KWIWTSFYSV  960
LTTVKCGKKS FKESLVRCES CHDLYWRDEK HCRICHSTFE VGFDLEEKYA VHAATCREPE  1020
DAHEVPNHKV LPSQLQALKA AIHAIEASMP EVAFTGSWMK SAHKLWVKRL RRTSSLPELL  1080
QVLVDFVGAM DEDWLYKSSS SVSFSSYLDD IIVYFQTMPQ TTSAVALWVV KLDALIAPYL  1140
DKPDTSRALA MKELAQDHRL VQGSLEDGFF HVMLQQAPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16572RRRKERRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G470200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985013.20.0homeobox-DDT domain protein RLT3 isoform X1
RefseqXP_022679000.10.0homeobox-DDT domain protein RLT3 isoform X1
TrEMBLA0A368ST700.0A0A368ST70_SETIT; Uncharacterized protein
STRINGSi033977m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45563350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator