PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G449800.1.p | ||||||||
Common Name | SETIT_039675mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 23660.8 Da PI: 8.7371 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.8 | 0.00011 | 105 | 144 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +R +++ +++ L++l+ + +K + a++L +A +Ik+L+ Seita.9G449800.1.p 105 KRSQKLGDKITALQQLVSPY-----GKTDTASVLHEAATCIKHLH 144 6889999**********999.....9*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.953 | 94 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-5 | 105 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-9 | 105 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MWNCSVPHPL LLPYGDDYGI GASPIYSETR PAVSQFSFTQ PTAASPLVKW TAAGETMTGD 60 GSRLRGSKRF KTTTATATET AQGPQHGLRC HAKPTRNRTV KAPCKRSQKL GDKITALQQL 120 VSPYGKTDTA SVLHEAATCI KHLHEQIQIL TVSYPAISSP ASQQDTGEEE GATDLRRRGL 180 CLAPLSPEVV QLAVTVEAAL RHRDTADTED RWRLLGTL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 70 | RLRGSKRFK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G449800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792107.1 | 1e-116 | uncharacterized protein LOC112873346 | ||||
Swissprot | Q9SFZ3 | 2e-20 | BH110_ARATH; Transcription factor bHLH110 | ||||
TrEMBL | K4AL95 | 1e-159 | K4AL95_SETIT; Uncharacterized protein | ||||
STRING | Si039675m | 1e-160 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3758 | 24 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 4e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G449800.1.p |
Publications ? help Back to Top | |||
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