PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G433600.1.p
Common NameSETIT_039512mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 378aa    MW: 40895.6 Da    PI: 7.8003
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G433600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-08308332227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ktelC+ + r G C+y  rC+FaHg+
  Seita.9G433600.1.p 308 KTELCNKWER-GGCPYDRRCRFAHGM 332
                         8*********.*************95 PP
2zf-CCCH19.61.6e-06344369126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt  C+ fa+   C+yG rC+F H+
  Seita.9G433600.1.p 344 YKTLACQLFAAASGCPYGHRCHFRHS 369
                         99*********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-15303338IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-5306332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619306333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-8306337IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-6308332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-9339369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7340370IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-4343370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389343371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEGELGFLSP ARPSRVSSKR GDDRGFGSPT WSSPLGTLLD SPSSCISESR AGGDGVSGFS  60
SPTWGSPLEK LFNSPSSCVS DDSRVGGNGS GFSSPTWGSP LETLFYSPSS CVSDSRGDGD  120
GSGFSKPKQA SPLETLLNSP SSCVSDGRGC GNSSSPRVSK ERDSEVQKAE RLLREIAERY  180
DDCFLRLRNA TAELADLRRE RIHLGAENLH LSLLLEELEA AEQSKQASAV ALNLTLPPRP  240
VQAEAASGRA PKSISMRSKG FLSPKQPLRE TQPQRLRVRT SPAKEDASEK EKDDGEVEME  300
ASRQGAVKTE LCNKWERGGC PYDRRCRFAH GMEELRPVIR HPRYKTLACQ LFAAASGCPY  360
GHRCHFRHSL PSTVETC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-15307369467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G433600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186687e-66AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372677e-66AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149597e-66AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126117e-66CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679282.10.0putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN81e-115C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLK4AKT50.0K4AKT5_SETIT; Uncharacterized protein
STRINGSi039512m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-34C3H family protein