PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G421000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 269aa    MW: 28222.6 Da    PI: 10.3939
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G421000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.24.7e-15173214546
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                         +r +r++kNRe+A rsR+RK+a++ eLe+k+ +Le+eN++L+
  Seita.9G421000.1.p 173 RRKKRMIKNRESAARSRARKQAYTNELENKISQLEEENERLR 214
                         799**************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-14166214No hitNo description
SMARTSM003384.4E-9169236IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.656171214IPR004827Basic-leucine zipper domain
CDDcd147071.92E-20173214No hitNo description
PfamPF001701.5E-12173214IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.75E-11173215No hitNo description
PROSITE patternPS000360176191IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGAKAMSSHG SGAAGGGGGG AALSRQGSVC SLTFGEADGQ LHGVNLDDLL RAGRKTVDEV  60
WRDIQGAGGG ACPRAQMTLE DFLSRAGTSA PADAAGNGAC ARSWGAHQLY QPAPAPQLGR  120
HHQPAVGRPV PRPLGVGAGP VLEALYYEGG AAAAAGGNRA GPEHGVAERS NERRKKRMIK  180
NRESAARSRA RKQAYTNELE NKISQLEEEN ERLRGHKMTL AVVAVGSAVL RSELRRGQAP  240
EPVVQYVPQQ EVKNQLQLQL RRTNSANF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G421000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614239e-37AK361423.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987020.20.0ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
TrEMBLA0A368SRJ10.0A0A368SRJ1_SETIT; Uncharacterized protein
STRINGSb01g036810.11e-109(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44413367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.15e-24ABA-responsive element binding protein 3