 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.9G391800.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
GeBP |
| Protein Properties |
Length: 377aa MW: 41331.5 Da PI: 9.8715 |
| Description |
GeBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.9G391800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF573 | 103.3 | 2e-32 | 70 | 169 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqki 88
lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++k+qlveKirrLK+K++++v++ + g ++f+++h+q i
Seita.9G391800.1.p 70 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLHTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFTFRSPHEQAI 160
79*************************8867778***************************************88899************* PP
DUF573 89 felskkiWg 97
fe+++ iW+
Seita.9G391800.1.p 161 FEIARTIWR 169
********8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 377 aa
Download sequence Send
to blast |
MFPTVDDPSA AGAMVSSSFP DADAYGNGDS DDLDFPVDPH PTPVFSSPPA APASAATAAA 60
PASAGERRPL FQRLWTDEDE IVILRAFAEF TAQRGTSFAS HQYDTTPFYE DMRRRLHTGF 120
TKNQLVEKIR RLKRKYRNCV ERLRVAGAGF TFRSPHEQAI FEIARTIWRP DSDKHGRDSD 180
DEGGASGANA HDGPLAIIDA VAPNGESTKS PTSRPRRGRR RRTGDFPADA AAETLALPQP 240
PMPLWPRTRS RPSPRPGCLP WTAASAWAAS AWTPRCRPRY PRPRRQRPTV ENPILAALFK 300
EMVRAMLSIG GGGGAAPMGL EPPPAIAGLP MEGEKWRQQR IRELEVYLRR IDLLQDQARA 360
ALEELRSAPH AGGMNS*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT064599 | 0.0 | BT064599.1 Zea mays full-length cDNA clone ZM_BFc0188M08 mRNA, complete cds. |
| GenBank | EU972116 | 0.0 | EU972116.1 Zea mays clone 375368 hypothetical protein mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G04930.2 | 8e-32 | DNA-binding storekeeper protein-related transcriptional regulator |
