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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Seita.9G388000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
C2H2 |
| Protein Properties |
Length: 165aa MW: 17362.6 Da PI: 7.0567 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.9G388000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.9 | 0.00016 | 51 | 71 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C++Cg+ F ++ L H++ H
Seita.9G388000.1.p 51 CTYCGRKFYSSQALGGHQNAH 71
******************988 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 165 aa
Download sequence Send
to blast |
MIAYSTIIPV TALIQQAIME MEQELDLELR LFHPSSASAA PPEEPPGFFL CTYCGRKFYS 60
SQALGGHQNA HKYERTLAKR RREIAAAMRA HGAASSAATA TGAAVQVVDV DADSDSPGSA 120
GGDSNVEKAR PPLGKKQAAA VAGQYGGLLR HVDRAGELDL SLRL*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005686 | 2e-48 | AP005686.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0016E03. |
| GenBank | AP005747 | 2e-48 | AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17. |
| GenBank | AP014965 | 2e-48 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012617 | 2e-48 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
