PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G361000.1.p
Common NameLOC101761629, SETIT_039456mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 406aa    MW: 43952.9 Da    PI: 5.9597
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G361000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011260282123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+Cp Cg+ F +   L  H  +H
  Seita.9G361000.1.p 260 YECPGCGRAFQSYQALGGHRASH 282
                         99********9999888888777 PP
2zf-C2H210.80.0016341363123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C k+F +   L  H r+H
  Seita.9G361000.1.p 341 FECPICFKVFGSGQALGGHKRSH 363
                         89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.2E-71436No hitNo description
PfamPF139128.2E-51436IPR007087Zinc finger, C2H2
SMARTSM003550.61436IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2861437IPR007087Zinc finger, C2H2
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SuperFamilySSF576673.2E-7255282No hitNo description
PfamPF139128.1E-11259284IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492260287IPR007087Zinc finger, C2H2
SMARTSM003550.21260282IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889341364IPR007087Zinc finger, C2H2
PfamPF139123.8E-11341364IPR007087Zinc finger, C2H2
SMARTSM003550.15341363IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280343363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGDVVVLSSS ATRHSCKVCR KGFPCGRSLG GHMRSHSLAE VETAVEDDAY NNGEEQQQRR  60
GSDCVMAPGA GGYGLRENPK KTRRLSGLDG GDESGGRQDE CGHGDRGELL WPRAPEVDNE  120
RCHAPGVGFV EVEEAEREQE DAMLIPAEPA AGLMPAPRRR RRSMRVPAPA PPPAFDKEPE  180
DVALCLIMLS RDILDRRDST DTGGGYSPEK DRRRRRDYHH DADSDDASAL FQYTDIEIST  240
KINKRKPNRS LAGDEKRGRY ECPGCGRAFQ SYQALGGHRA SHKRINSNCC IAKAAPDKPE  300
LSVETNASFS TASLDTEYTA DITNNTAVVA LKAKPPKAIK FECPICFKVF GSGQALGGHK  360
RSHSIAGELY QHAPADGDAG IDEPEQPMIA DGFLDLNLPA PGAED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210216DRRRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G361000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986893.10.0zinc finger protein ZAT4
TrEMBLK4AKN30.0K4AKN3_SETIT; Uncharacterized protein
STRINGSi039456m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-23C2H2-like zinc finger protein