PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G359600.1.p
Common NameSETIT_035317mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 502aa    MW: 52791.8 Da    PI: 8.3334
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G359600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.4e-31218274259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK vkg e+prsYY+Ct+a+Cpvkkkvers  ++++++i+Y+g+Hnh+
  Seita.9G359600.1.p 218 DDGYNWRKYGQKAVKGGEYPRSYYKCTHASCPVKKKVERSG-EGHITQIIYRGQHNHQ 274
                         8***************************************9.***************8 PP
2WRKY104.17.9e-33386444159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  Seita.9G359600.1.p 386 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 444
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-27214276IPR003657WRKY domain
SuperFamilySSF1182909.94E-25216276IPR003657WRKY domain
SMARTSM007743.9E-33217275IPR003657WRKY domain
PfamPF031069.8E-24218274IPR003657WRKY domain
PROSITE profilePS5081123.399218276IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-36373446IPR003657WRKY domain
SuperFamilySSF1182902.48E-29378446IPR003657WRKY domain
PROSITE profilePS5081137.172381446IPR003657WRKY domain
SMARTSM007741.0E-38386445IPR003657WRKY domain
PfamPF031061.8E-25387444IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MAAHEASASA PAAGDGAARR PPRPTLALPP RSAVESLFAG AGGSSSSAGA AETSPGPLTL  60
AAALFPDAPS PAFHGSFTQL LVGAIGSPAA AAAAAVPTPP SPFSVPPGLS PTALLGSPGL  120
FSPTGSFEMS HQQALAQVTA QAVHSQYNMI NNSDYSIPFS STTKPAANVK LQHVNPANVT  180
STQEISTLPS HTGNNNIEPN EVSQGLQNSA PTFDKPADDG YNWRKYGQKA VKGGEYPRSY  240
YKCTHASCPV KKKVERSGEG HITQIIYRGQ HNHQRPPKRR SKDGGGLLNE ADDFHENEDA  300
STRSEPGSQD HSGKHGGSND GLAGPSVSRR REGDEQLSGS SDSEEEADDE QRVGNGDAGR  360
ANANRRHVPT PARRIIVQTT SEVDLLDDGY RWRKYGQKVV KGNPHPRSYY KCTYQGCDVK  420
KHIERSSQDP KAVITTYEGK HSHDVPAARN SSHAAAAAAN ANASSSSSLP HKGQNSASSS  480
RKRADMSSAS SMLLKEENEI T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38218447878Probable WRKY transcription factor 4
2lex_A4e-38218447878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274279RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G359600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9577240.0EU957724.1 Zea mays clone 1612894 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983974.30.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9ZQ701e-109WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLK4A8W10.0K4A8W1_SETIT; Uncharacterized protein
STRINGSi035317m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-77WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]