PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G359600.1.p | ||||||||
Common Name | SETIT_035317mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 502aa MW: 52791.8 Da PI: 8.3334 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.8 | 3.4e-31 | 218 | 274 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK vkg e+prsYY+Ct+a+Cpvkkkvers ++++++i+Y+g+Hnh+ Seita.9G359600.1.p 218 DDGYNWRKYGQKAVKGGEYPRSYYKCTHASCPVKKKVERSG-EGHITQIIYRGQHNHQ 274 8***************************************9.***************8 PP | |||||||
2 | WRKY | 104.1 | 7.9e-33 | 386 | 444 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+ Seita.9G359600.1.p 386 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 444 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-27 | 214 | 276 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-25 | 216 | 276 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-33 | 217 | 275 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.8E-24 | 218 | 274 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.399 | 218 | 276 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.4E-36 | 373 | 446 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-29 | 378 | 446 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.172 | 381 | 446 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-38 | 386 | 445 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-25 | 387 | 444 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MAAHEASASA PAAGDGAARR PPRPTLALPP RSAVESLFAG AGGSSSSAGA AETSPGPLTL 60 AAALFPDAPS PAFHGSFTQL LVGAIGSPAA AAAAAVPTPP SPFSVPPGLS PTALLGSPGL 120 FSPTGSFEMS HQQALAQVTA QAVHSQYNMI NNSDYSIPFS STTKPAANVK LQHVNPANVT 180 STQEISTLPS HTGNNNIEPN EVSQGLQNSA PTFDKPADDG YNWRKYGQKA VKGGEYPRSY 240 YKCTHASCPV KKKVERSGEG HITQIIYRGQ HNHQRPPKRR SKDGGGLLNE ADDFHENEDA 300 STRSEPGSQD HSGKHGGSND GLAGPSVSRR REGDEQLSGS SDSEEEADDE QRVGNGDAGR 360 ANANRRHVPT PARRIIVQTT SEVDLLDDGY RWRKYGQKVV KGNPHPRSYY KCTYQGCDVK 420 KHIERSSQDP KAVITTYEGK HSHDVPAARN SSHAAAAAAN ANASSSSSLP HKGQNSASSS 480 RKRADMSSAS SMLLKEENEI T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-38 | 218 | 447 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-38 | 218 | 447 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 274 | 279 | RPPKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G359600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957724 | 0.0 | EU957724.1 Zea mays clone 1612894 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983974.3 | 0.0 | probable WRKY transcription factor 4 isoform X1 | ||||
Swissprot | Q9ZQ70 | 1e-109 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | K4A8W1 | 0.0 | K4A8W1_SETIT; Uncharacterized protein | ||||
STRING | Si035317m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1345 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-77 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G359600.1.p |
Publications ? help Back to Top | |||
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