PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G357500.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 308aa MW: 32498.3 Da PI: 9.5656

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G357500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00055	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk F + L H ++H Seita.9G357500.1.p 164 FRCAVCGKAFASYQALGGHKSSH 186 89**********99999999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	4.3E-12	163	188	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.679	164	191	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.11	164	186	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.58E-8	164	186	No hit	No description
PROSITE pattern	PS00028	0	166	186	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.58E-8	216	243	No hit	No description
SMART	SM00355	0.91	221	243	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	9.1E-10	221	244	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.995	221	243	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	223	243	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MRLRATCSFF PSLHQTNPQT SSRFLTSFLH LSDRCPYIST RATPSPFVLQ LELSNRLAAA 60 TTNAGKVELK VIPRARGFSP AASAAIAMVA GVEALVDPTA LSLALPMPTP ALKEEDYLAI 120 CLAALAGTRG TGLKPAGFGQ HGKWCPQPIA APPPPPAREE ELRFRCAVCG KAFASYQALG 180 GHKSSHRKPP TEQQRAAALA AAAAQAAASA GGLDETAPGP HRCTICRRGF ATGQALGGHK 240 RCHYWDGMSV SVSVSASGTT GSSGVTVRDF DLNLAPLPES YAGMKRWAEE EEVQSPLPIK 300 KRRMLID*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269\|PubMed:25071223}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G357500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269\|PubMed:25071223}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983953.1	1e-159	zinc finger protein 1
Swissprot	Q75KE5	9e-71	ZFP36_ORYSJ; Zinc finger protein 36
TrEMBL	A0A368SPA3	0.0	A0A368SPA3_SETIT; Uncharacterized protein
STRING	Si037429m	1e-159	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3412	32	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	4e-25	salt tolerance zinc finger

Link Out ? help Back to Top
Phytozome	Seita.9G357500.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Zhang H, et al. A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice. J. Exp. Bot., 2014. 65(20): p. 5795-809 [PMID:25071223] Li W, et al. A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance. Cell, 2017. 170(1): p. 114-126.e15 [PMID:28666113]