PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G356100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 214aa    MW: 21895 Da    PI: 8.3323
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G356100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260933.5e-292103197
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++Cvl+p++     +++q +++ +v+k+FG++ +l++++a+p+ +r+++++sl+yeA  r+ +Pv+Gavg++ +++++
  Seita.9G356100.1.p   2 SCNGCRVLRKGCSEGCVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPDAQRPALFQSLLYEAAGRTINPVHGAVGLLGTGNWH 92 
                         6*********************9998656778*********************************************************** PP

              DUF260  87 leqlkaelall 97 
                         l+q++++++l+
  Seita.9G356100.1.p  93 LCQAAVDTVLR 103
                         ****9998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.9191107IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-252100IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPDAQR  60
PALFQSLLYE AAGRTINPVH GAVGLLGTGN WHLCQAAVDT VLRGGAIGPL PELGRGTAGS  120
GDLYGPACAA KRAGGWSTFS TAKRVRKAAN DAPPAAEAPC DLGLCLSPGS PPAPGERRAP  180
LLRPGTPSMS SDESVTTTTT GGDREPVLLN LFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G356100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0976401e-152FP097640.1 Phyllostachys edulis cDNA clone: bphyem213i10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983938.11e-152LOB domain-containing protein 37
SwissprotQ9FN114e-67LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A368SP591e-151A0A368SP59_SETIT; Uncharacterized protein
STRINGPavir.Ia03080.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-69LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]