PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G325700.2.p
Common NameLOC101755679, SETIT_035334mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 499aa    MW: 51249.5 Da    PI: 6.7801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G325700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.2e-16299344555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hne Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  Seita.9G325700.2.p 299 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 344
                         *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.025294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-20297367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-18299356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13299344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.72E-18299348No hitNo description
SMARTSM003531.2E-18300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MNQCVPSWDL DDPAVVAGGG GGGLNHPVPA AGGAHRVVVS AAGTTGGAFA PVVVPMSDKY  60
YEVAELTWEK GNISSHGLLN RPAPSKYPPA APSHLQGIGG GAGAGGVAGD RETLEAVVGE  120
AAARSHFLSQ PPAVHHHAPW LGAAGGAVAR TGADALVPCA ARVVDEAAEG GDAADASRRK  180
RARVVGEDGL VCASQGSAAP GRRGESALLT LDGGCGTGAD DLCGFTTTTN NSTSLDRDDK  240
GSPDTENTSI GGGASDSRCF SRRSQRDGLC DEGENVVING DGAVRSSIST KRSRAAAIHN  300
ESERKRRDRI NQKMKTLQKL VPNSSKTDKA SMLDEVIDYL KQLQAQVQVM SRMSSMMMPM  360
AMPQLQMSVM AQMAQMAQMA QMAQGMMNMG SLAQPGYAGL TPPMMPPFVP MSWDPTAAAA  420
ATSAAGAGAG VMGTDRAPQP GAAAGAVPDA FTAFLACQAQ QNGQQPGSME AYNKMVALYQ  480
KMSQQQQQQG QPSNSSKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302307ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G325700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660002.10.0transcription factor UNE10 isoform X2
TrEMBLA0A368SN180.0A0A368SN18_SETIT; Uncharacterized protein
STRINGSi035334m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.16e-32bHLH family protein