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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.9G321500.1.p |
| Common Name | LOC101777284, SETIT_036388mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
HD-ZIP |
| Protein Properties |
Length: 353aa MW: 37940.9 Da PI: 8.7793 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.9G321500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 50.2 | 4.4e-16 | 176 | 235 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--H.....HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsa.....eereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee F+++++++ ++++ LAk+l+L+ rqV vWFqNrRa+ k
Seita.9G321500.1.p 176 RKKLRLSKDQAAVLEESFKEHNTLNPvrtlpKQKAALAKQLNLKPRQVEVWFQNRRARTK 235
788899*************999988533444899************************98 PP
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| 2 | HD-ZIP_I/II | 118.8 | 3e-38 | 176 | 270 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLep.....erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
+kk+rlsk+q+++LEesF+e+++L+p ++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++ev+e
Seita.9G321500.1.p 176 RKKLRLSKDQAAVLEESFKEHNTLNPvrtlpKQKAALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQREVAE 266
69**********************964444489********************************************************** PP
HD-ZIP_I/II 87 Lreel 91
Lr +l
Seita.9G321500.1.p 267 LR-AL 270
*9.55 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MEMAVNARDR EQHGHGGLGL GLSLSLSIAT AAPPPQQQRA ISVAPISSHP APPVPPQPQW 60
WNGGAGLFFS PSSGMVDRSM ERKLQQQPAV AAACHGHEMP FLRGIDVNRA PAAGESRRGC 120
CSEDEEPAAS SPNSTLSSLS GKRPAATRSG DLEGDHTPRA GGASDDEDSG AGGGSRKKLR 180
LSKDQAAVLE ESFKEHNTLN PVRTLPKQKA ALAKQLNLKP RQVEVWFQNR RARTKLKQTE 240
VDCEFLKRCC ETLTEENRRL QREVAELRAL KLVAPHQYAR MPPPTTLTMC PSCERLATAD 300
EAGRAARPAA PTGPWGPVPV RPVFVDGMII DADARPEHPN SGGPVVVEKK SW*
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| Nucleic Localization
Signal ? help
Back to Top |
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| No. |
Start |
End |
Sequence |
| 1 | 174 | 180 | SRKKLRL |
| 2 | 229 | 237 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:10934011, ECO:0000269|PubMed:9076993}. |
| UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:9076993}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10732669}. |
| UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10934011}. |
| Publications
? help Back to Top |
- Scarpella E,Boot KJ,Rueb S,Meijer AH
The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition.
Plant Physiol., 2002. 130(3): p. 1349-60
[PMID:12428000] - Scarpella E,Rueb S,Meijer AH
The RADICLELESS1 gene is required for vascular pattern formation in rice.
Development, 2003. 130(4): p. 645-58
[PMID:12505996] - Rice Chromosome 10 Sequencing Consortium
In-depth view of structure, activity, and evolution of rice chromosome 10.
Science, 2003. 300(5625): p. 1566-9
[PMID:12791992] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Scarpella E,Simons EJ,Meijer AH
Multiple regulatory elements contribute to the vascular-specific expression of the rice HD-Zip gene Oshox1 in Arabidopsis.
Plant Cell Physiol., 2005. 46(8): p. 1400-10
[PMID:15964905] - Meijer AH,Ouwerkerk PB,Hoge JH
Vectors for transcription factor cloning and target site identification by means of genetic selection in yeast.
Yeast, 1998. 14(15): p. 1407-15
[PMID:9848232]
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