PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G320700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 271aa    MW: 29186.9 Da    PI: 7.0027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G320700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.3e-1899149255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp     k +r++lg+++ta eAa+a+++a+  l+g
  Seita.9G320700.1.p  99 RYRGVRQRP-WGKYAAEIRDP---ArKGARVWLGTYDTAVEAARAYDRAAFLLRG 149
                         7********.**********8...4445**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-2399158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-3299158IPR001471AP2/ERF domain
PfamPF008479.8E-1399149IPR001471AP2/ERF domain
PROSITE profilePS5103224.19799157IPR001471AP2/ERF domain
SMARTSM003803.1E-3799163IPR001471AP2/ERF domain
CDDcd000181.05E-2899158No hitNo description
PRINTSPR003671.4E-10100111IPR001471AP2/ERF domain
PRINTSPR003671.4E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MALLHEHLDI IRAHLLDDSH DAAAAASSED YSASSPPPSP PAAGRRPLPA LSVALPPRTA  60
AVALQQQQLW APPPPPQIIH HHQQEQHCFP GPEEDDFRRY RGVRQRPWGK YAAEIRDPAR  120
KGARVWLGTY DTAVEAARAY DRAAFLLRGS KAILNFPNEV AFGTAARWGP PAAAPRPSAA  180
TAGSNKRARS PEPALREQDA GCMVREVKKE RVQEPAASCG WDGAVVMAPA AASEGAADFF  240
WEEEELLKGT ICSLPPLSPY PQLVHASICA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-27100163669ATERF1
3gcc_A4e-27100163669ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G320700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9770887e-93EU977088.1 Zea mays clone 998737 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983639.10.0ethylene-responsive transcription factor ERF105
TrEMBLA0A368SMX70.0A0A368SMX7_SETIT; Uncharacterized protein
STRINGPavir.Ib02259.1.p1e-108(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-27ERF family protein