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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.9G318500.1.p |
Common Name | LOC101764054, SETIT_036682mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
Trihelix |
Protein Properties |
Length: 318aa MW: 33746.1 Da PI: 9.9519 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.9G318500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 71.5 | 1.5e-22 | 58 | 147 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
+Wt++e+laLiea+r+++e+lr+g+l++++W++v++++ + +s +qC++k+e+l+kry++++ ++ +r+++ ++p+f l
Seita.9G318500.1.p 58 CWTEEETLALIEAYRDRWEALRKGNLRAADWDRVANAVtarcgrFPTATPKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFPLL 146
8*************************************998888788899*************************98443..47****988 PP
trihelix 86 e 86
+
Seita.9G318500.1.p 147 H 147
6 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MSSSSSDAAR DDVVSSPDLP PLAAPVAAAA AAAAAAASSG GGIGLGGGAS GRRLPPPCWT 60 EEETLALIEA YRDRWEALRK GNLRAADWDR VANAVTARCG RFPTATPKSG VQCRHKIEKL 120 RKRYRAERSR SAGRSKGPKW PFFPLLHDLA GGGVPDPSPN AIVKIKTKGP APLASTPSPV 180 SSPSSEEGVR SRSLHGLISN GGAGSGLRFT IPKASRSKPA GVAAVKPERN GGEDDAESEA 240 MAEVADALRA VGEGFLRMEE RRLELSLQME KEWMESEMKR TQTMLDAQQL FFEAFLGKQQ 300 QHKKARHSPA SNAMEED*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT040727 | 0.0 | BT040727.1 Zea mays full-length cDNA clone ZM_BFc0120O10 mRNA, complete cds. |
GenBank | EU959937 | 0.0 | EU959937.1 Zea mays clone 220734 mRNA sequence. |
GenBank | KJ727852 | 0.0 | KJ727852.1 Zea mays clone pUT5897 trihelix transcription factor (THX4) gene, partial cds. |