PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Seita.9G291600.1.p

Common Name

SETIT_039575mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 568aa MW: 65270.1 Da PI: 8.1064

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G291600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.8	6.1e-07	2	36	57	90
FAR1 57 etrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + r++Cka +k+k + ++ w ++++leHnH+l Seita.9G291600.1.p 2 SMRCECKAFVKIKWNWkKDYWFFERIRLEHNHPLH 36 579********88779*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MSMRCECKAF VKIKWNWKKD YWFFERIRLE HNHPLHSSLI VTQFLRIQKD NDPIVMGIVD 60 QMHRCGASHN TTVNVLAELY GGRQNFMFTE MDLRNMKAAT AREERENDTP KLLEFFKDMK 120 AHNEYFYYEM QDEQANIFEW LYGAFQNCLS GSSDPRCILT SVQKTQHRLC RWHMLKKYKV 180 ELKKLYKIQD GLKIKLLTVI NHPLTPTEFE PAGNELVDEY GIREDDTIQG LWESRKLWVA 240 AYLKPLYCGR MTSTQRSESV SKMIKGSGFT VHMTCISKFA RRMLDFIQHA NHTAGGETHW 300 SQAGNLRLTL QPFDGHLSRV ETYIYSTAFR IDPHPNEVDV YLVTHTDQSW QYAWFQHSFR 360 VEADVRSEYI MKRYTRGART VVMWDRHGIV NSGPRCESDQ YKTKKLVEIV MVAIRACRKT 420 SPGFEKGYEQ LTALVEWGEI IARDTGASHV GDHTEEQNEV IPDTGGEPEA SWAEQDVQNK 480 SIDEPLAPLV QTPVQILECA PREARTKGRK HGGKQVVNDH ASSSKAPRQQ TCGYCGSLGH 540 YSTGCDVNLD NANKKRGASG SLWGKMG*

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MSMRCECKAF VKIKWNWKKD YWFFERIRLE HNHPLHSSLI VTQFLRIQKD NDPIVMGIVD  60
QMHRCGASHN TTVNVLAELY GGRQNFMFTE MDLRNMKAAT AREERENDTP KLLEFFKDMK  120
AHNEYFYYEM QDEQANIFEW LYGAFQNCLS GSSDPRCILT SVQKTQHRLC RWHMLKKYKV  180
ELKKLYKIQD GLKIKLLTVI NHPLTPTEFE PAGNELVDEY GIREDDTIQG LWESRKLWVA  240
AYLKPLYCGR MTSTQRSESV SKMIKGSGFT VHMTCISKFA RRMLDFIQHA NHTAGGETHW  300
SQAGNLRLTL QPFDGHLSRV ETYIYSTAFR IDPHPNEVDV YLVTHTDQSW QYAWFQHSFR  360
VEADVRSEYI MKRYTRGART VVMWDRHGIV NSGPRCESDQ YKTKKLVEIV MVAIRACRKT  420
SPGFEKGYEQ LTALVEWGEI IARDTGASHV GDHTEEQNEV IPDTGGEPEA SWAEQDVQNK  480
SIDEPLAPLV QTPVQILECA PREARTKGRK HGGKQVVNDH ASSSKAPRQQ TCGYCGSLGH  540
YSTGCDVNLD NANKKRGASG SLWGKMG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G291600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022681792.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A368SLV3	0.0	A0A368SLV3_SETIT; Uncharacterized protein
TrEMBL	K4AKZ6	0.0	K4AKZ6_SETIT; Uncharacterized protein
STRING	Si039575m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16437	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	3e-12	FAR1-related sequence 1

Link Out ? help Back to Top
Phytozome	Seita.9G291600.1.p