PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G268200.2.p
Common NameLOC101765666, SETIT_034046mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CAMTA
Protein Properties Length: 1030aa    MW: 114691 Da    PI: 5.8717
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G268200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.51.2e-53211382118
                CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                         lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+e+n
  Seita.9G268200.2.p  21 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGEDN 111
                         45559************************************************************************************** PP

                CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                          +fqrr+yw+Lee++ +ivlvhyle+k
  Seita.9G268200.2.p 112 INFQRRTYWMLEEDFMHIVLVHYLETK 138
                         ************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.64917143IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7220138IPR005559CG-1 DNA-binding domain
PfamPF038595.3E-4823136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.1E-6449536IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.0E-16450536IPR014756Immunoglobulin E-set
PfamPF018333.9E-7450528IPR002909IPT domain
SuperFamilySSF484034.66E-16644745IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.4E-17646747IPR020683Ankyrin repeat-containing domain
CDDcd002043.64E-12646743No hitNo description
PROSITE profilePS500888.683652684IPR002110Ankyrin repeat
PROSITE profilePS5029716.175652745IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736685717IPR002110Ankyrin repeat
SuperFamilySSF525402.07E-8845897IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.086846868IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407847876IPR000048IQ motif, EF-hand binding site
PfamPF006120.0032848867IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022869891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56870894IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4872891IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1030 aa     Download sequence    Send to blast
MASVEARRLA VVPQLDIEQI LKEAQHRWLR PAEICEILKN YRNFRIAPEP PNRPPSGSLF  60
LFDRKVLRYF RKDGHNWRKK NDQKTVKEAH ERLKSGSIDV LHCYYAHGED NINFQRRTYW  120
MLEEDFMHIV LVHYLETKGG KSSRTRVNNN MIQEAAVDSP SSQLPSQTIE GESSFSGQAS  180
EYEDAESDIY SGGAGYHSFT RMQQHENGTG PVIDSSVFNS YTPTSSIGNY QGLHAMTQNT  240
SFYPGNQHNS PLVLNGSSTM VAANGRANQT DVPSWNPVIE LDNGPVQMPP LQFSVPPDQG  300
TSTEGLGIDY LTFDEVYSDG LSLKDIGAAG ADGESFWQFP SATGDLSTAE NSFPQQNDGS  360
LEAAIGGYPF LKTQSSNLSD ILKDSFKKTD SFTRWMSKEL PEVEDSQIQS SSGVYWSTEE  420
ADNIIEASSR EPLDQFTVSP MLSQDQLFSI VEFAPSWTYV GSKTKILVTG NILNNSQVTE  480
RCKWSCMFGE VEVPAKILAD GTLICYSPQH KPGRVPFYIT CSNRLACSEV REFEFRPTVT  540
QYMDAPSPHG ATNKVYFQIR LDKLLSLGPD EYQATVSNPS LEMIELSKKI GSLMMSNDEW  600
SNLLKLAVDN NEHSTDDQQD QFAENLIKDK LHVWLLNKVG VGGKGPSVLD DEGQGVLHLA  660
AALGYDWAIR PTLAAGVNIN FRDVHGWTAL HWAAFCGRER TVVALIALGA APGALTDPSP  720
DFPERTPADL ASANGQKGIS GFLAESSLTS HLQALNLKEA NMAEISGLPG IGDVNERNSL  780
QPPSGDSLGP VRNAAQAAAR IYQVFRVQSF QRKQAAQYED DKGGMSDERA LSLLSVKPSK  840
PGQLDPLHSA ATRIQNKFRG WKGRKEFLLI RQRIVKIQAH VRGHQVRKHY RKIVWSVGIV  900
EKIILRWRRR GAGLRGFRST EGSTEGSSGG TSSSLIQDKP SRDDYDFLQE GRKQTEERLQ  960
KALARVKSMA QYPEARDQYH RIYTVVSKMQ ESQAMQEKMV EESAEMDDGY LMNELQELLN  1020
DDTSIHGYF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G268200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983218.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLK4A5950.0K4A595_SETIT; Uncharacterized protein
STRINGSi034046m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains