![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.9G268200.1.p | ||||||||
Common Name | LOC101765666, SETIT_034046mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 1031aa MW: 114762 Da PI: 5.8717 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 171.5 | 1.2e-53 | 21 | 138 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+e+n Seita.9G268200.1.p 21 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGEDN 111 45559************************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhylevk 118 +fqrr+yw+Lee++ +ivlvhyle+k Seita.9G268200.1.p 112 INFQRRTYWMLEEDFMHIVLVHYLETK 138 ************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.649 | 17 | 143 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.8E-72 | 20 | 138 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 5.3E-48 | 23 | 136 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 3.1E-6 | 450 | 537 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 3.9E-7 | 451 | 529 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 5.0E-16 | 451 | 537 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 4.66E-16 | 645 | 746 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.64E-12 | 647 | 744 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 7.4E-17 | 647 | 748 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.683 | 653 | 685 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 16.175 | 653 | 746 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.736 | 686 | 718 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 2.07E-8 | 846 | 898 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.086 | 847 | 869 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.407 | 848 | 877 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0032 | 849 | 868 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 870 | 892 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.56 | 871 | 895 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.0E-4 | 873 | 892 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1031 aa Download sequence Send to blast |
MASVEARRLA VVPQLDIEQI LKEAQHRWLR PAEICEILKN YRNFRIAPEP PNRPPSGSLF 60 LFDRKVLRYF RKDGHNWRKK NDQKTVKEAH ERLKSGSIDV LHCYYAHGED NINFQRRTYW 120 MLEEDFMHIV LVHYLETKGG KSSRTRVNNN MIQEAAVDSP SSQLPSQTIE GESSFSGQAS 180 EYEDAESADI YSGGAGYHSF TRMQQHENGT GPVIDSSVFN SYTPTSSIGN YQGLHAMTQN 240 TSFYPGNQHN SPLVLNGSST MVAANGRANQ TDVPSWNPVI ELDNGPVQMP PLQFSVPPDQ 300 GTSTEGLGID YLTFDEVYSD GLSLKDIGAA GADGESFWQF PSATGDLSTA ENSFPQQNDG 360 SLEAAIGGYP FLKTQSSNLS DILKDSFKKT DSFTRWMSKE LPEVEDSQIQ SSSGVYWSTE 420 EADNIIEASS REPLDQFTVS PMLSQDQLFS IVEFAPSWTY VGSKTKILVT GNILNNSQVT 480 ERCKWSCMFG EVEVPAKILA DGTLICYSPQ HKPGRVPFYI TCSNRLACSE VREFEFRPTV 540 TQYMDAPSPH GATNKVYFQI RLDKLLSLGP DEYQATVSNP SLEMIELSKK IGSLMMSNDE 600 WSNLLKLAVD NNEHSTDDQQ DQFAENLIKD KLHVWLLNKV GVGGKGPSVL DDEGQGVLHL 660 AAALGYDWAI RPTLAAGVNI NFRDVHGWTA LHWAAFCGRE RTVVALIALG AAPGALTDPS 720 PDFPERTPAD LASANGQKGI SGFLAESSLT SHLQALNLKE ANMAEISGLP GIGDVNERNS 780 LQPPSGDSLG PVRNAAQAAA RIYQVFRVQS FQRKQAAQYE DDKGGMSDER ALSLLSVKPS 840 KPGQLDPLHS AATRIQNKFR GWKGRKEFLL IRQRIVKIQA HVRGHQVRKH YRKIVWSVGI 900 VEKIILRWRR RGAGLRGFRS TEGSTEGSSG GTSSSLIQDK PSRDDYDFLQ EGRKQTEERL 960 QKALARVKSM AQYPEARDQY HRIYTVVSKM QESQAMQEKM VEESAEMDDG YLMNELQELL 1020 NDDTSIHGYF * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.9G268200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983217.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X1 | ||||
TrEMBL | K4A592 | 0.0 | K4A592_SETIT; Uncharacterized protein | ||||
STRING | Si034046m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.9G268200.1.p |
Entrez Gene | 101765666 |