PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

HD-ZIP

Protein Properties

Length: 300aa MW: 32729.6 Da PI: 4.9012

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G248400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.8e-19	73	126	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k Seita.9G248400.1.p 73 KKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWK 126 4557899**********************************************9 PP
2	HD-ZIP_I/II	125.5	2.3e-40	72	164	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+++qv++LE+sFe ++kL+perK+++ar+L l+prqvavWFqnrRAR+ktkq+E+d+++L++++dal++e ++L++++++L++e+ Seita.9G248400.1.p 72 EKKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWKTKQIERDFTTLRARHDALRAECDALRRDKDALAAEI 162 69**************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 +e Seita.9G248400.1.p 163 RE 164 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-19	54	129	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.471	68	128	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.47E-18	68	130	IPR009057	Homeodomain-like
SMART	SM00389	6.0E-19	71	132	IPR001356	Homeobox domain
CDD	cd00086	1.47E-16	73	129	No hit	No description
Pfam	PF00046	3.6E-16	73	126	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	103	126	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.6E-14	128	169	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MKRPTSRGSS MVCQATTDQQ EDSCRYMEQR HGVDGGDCGA AAAERDDVEA GAYDEEEEED 60 DELAGSRGGL GEKKRRLAAD QVRALERSFE VDNKLDPERK ARIARDLSLH PRQVAVWFQN 120 RRARWKTKQI ERDFTTLRAR HDALRAECDA LRRDKDALAA EIRELRSKVE KQMEVKLESA 180 EELLPVAAGT AAAAGAVYKD GSTDSDSSAV FNEEASPYSG AAFDHQHHHH QAHPSFTGFT 240 SFLASSTSLS SSFPSLYHGG SHLDQEADGF LSATAADGFF AAEEQGAAGL GSWYGGEGW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	128	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G248400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042027	0.0	BT042027.1 Zea mays full-length cDNA clone ZM_BFb0113G23 mRNA, complete cds.
GenBank	KJ727556	0.0	KJ727556.1 Zea mays clone pUT5416 HB transcription factor (HB127) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012704164.1	0.0	homeobox-leucine zipper protein HOX8 isoform X1
Swissprot	Q338Z7	8e-98	HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBL	A0A368SKA4	0.0	A0A368SKA4_SETIT; Uncharacterized protein
TrEMBL	K4AM78	0.0	K4AM78_SETIT; Uncharacterized protein
STRING	Si040014m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	3e-34	homeobox protein 16

Link Out ? help Back to Top
Phytozome	Seita.9G248400.1.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]