PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G247600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 421aa MW: 44944.7 Da PI: 8.9222 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.1e-05 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Seita.9G247600.1.p 83 FVCEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 172 | 194 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk++ +s+ k H + + Seita.9G247600.1.p 172 WRCERCGKRYAVQSDWKAHVKGC 194 58*****************9866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 82 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.52E-9 | 82 | 105 | No hit | No description |
Pfam | PF12171 | 6.5E-5 | 83 | 105 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 83 | 105 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 83 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 89 | 137 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.6E-5 | 160 | 192 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.52E-9 | 167 | 192 | No hit | No description |
SMART | SM00355 | 95 | 172 | 192 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MMLSDLSSDH EATGSSSHGG DIASYALSPL FLAPAPPLAG AAAPQTEAPR VGAKRKRSQP 60 GNPDPGAEVI ALSPRTLVAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRSLPSGA 120 GGRQGDAAAA PPRKRVYVCP EPTCVHHDPA RALGDLTGIK KHFSRKHGEK RWRCERCGKR 180 YAVQSDWKAH VKGCGTREYR CDCGILFTRK DSLLTHRAFC DALAEESARI LAAANNGSTI 240 TTTNSSNGGN SGSDLLFSNS SGVVTPLFLP FPNPPPSPPP PAAAAAQNPN AFYFLHHQEQ 300 QLAAPFLHPR MVQPSPYLDL HADAAAVTTA TCGGIGADTV NFGLAPDGSV ALRHRRLTRD 360 FLGVDGGSQV EELQLPIYAT AAAAAATVVP RAASCATDLT RQYLGERPLP PVNETWSHNF 420 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-34 | 168 | 236 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 8e-34 | 168 | 236 | 3 | 71 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as a flowering master switch in both long and short days, independently of the circadian clock (PubMed:18790997, PubMed:18725639, PubMed:18774969, PubMed:19304997, PubMed:24280027). Promotes flowering upstream of HD1 by up-regulating FTL1, FTL4, FTL5, FTL6, EHD1, HD3A and RFT1 (PubMed:18790997, PubMed:18725639, PubMed:18774969). Seems to repress FTL11 expression (PubMed:18725639). May recognize the consensus motif 5'-TTTGTCGTAAT-3' in target gene promoters (PubMed:18725639). {ECO:0000269|PubMed:18725639, ECO:0000269|PubMed:18774969, ECO:0000269|PubMed:18790997, ECO:0000269|PubMed:24280027, ECO:0000303|PubMed:19304997}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00673 | SELEX | Transfer from GRMZM2G011357 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G247600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by FKF1 (PubMed:25850808). Down-regulated by DLF1 (PubMed:25036785). During the basic vegetative growth phase (BVP, photoperiod-insensitive phase), suppressed via phytochrome-mediated light signals involving the phytochromobilin synthase HY2 (PubMed:25573482). {ECO:0000269|PubMed:25036785, ECO:0000269|PubMed:25573482, ECO:0000269|PubMed:25850808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983079.1 | 0.0 | protein indeterminate-domain 12 | ||||
Swissprot | B1B534 | 1e-140 | EHD2_ORYSJ; Protein EARLY HEADING DATE 2 | ||||
TrEMBL | A0A368SKG6 | 0.0 | A0A368SKG6_SETIT; Uncharacterized protein | ||||
STRING | Si036003m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13096 | 28 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 5e-99 | indeterminate(ID)-domain 7 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G247600.1.p |