PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

ERF

Protein Properties

Length: 131aa MW: 13671 Da PI: 8.895

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G238200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.6	2.1e-20	14	65	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +g+++AeIrdp + +r++lg+f+taeeAa+a+++a+ + +g Seita.9G238200.1.p 14 TKYRGVRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAFAQRG 65 69******.******8333..4*********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.06E-27	14	73	No hit	No description
Pfam	PF00847	1.7E-14	14	65	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.0E-31	15	73	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-23	15	74	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.276	15	73	IPR001471	AP2/ERF domain
SMART	SM00380	1.0E-33	15	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.2E-12	16	27	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.2E-12	39	55	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MAEDGNKDAG GGGTKYRGVR KRPWGKFAAE IRDPERGGAR VWLGTFDTAE EAARAYDRAA 60 FAQRGATAVL NFPGEIAGES RGGGSSSSSA AAAGSSRGGR ARGNGEKIEL EYLDDKILDD 120 LLDDGKYGRK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-29	8	117	2	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G238200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728277	5e-92	KJ728277.1 Zea mays clone pUT6555 AP2-EREBP transcription factor (EREB74) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004986547.2	6e-86	ethylene-responsive transcription factor ERF096
Swissprot	Q9LTC5	7e-36	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	K4AK87	2e-84	K4AK87_SETIT; Uncharacterized protein
STRING	Si039310m	4e-85	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	2e-20	ERF family protein

Link Out ? help Back to Top
Phytozome	Seita.9G238200.1.p
Entrez Gene	101753263

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]