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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Seita.9G203700.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
C3H |
| Protein Properties |
Length: 319aa MW: 34938.9 Da PI: 7.8614 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.9G203700.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 40.8 | 3.6e-13 | 67 | 91 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C+f+a+tG Ck+G++CkF+H++
Seita.9G203700.1.p 67 EPVCSFYAKTGKCKFGANCKFNHPM 91
789********************95 PP
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| 2 | zf-CCCH | 37.3 | 4.4e-12 | 141 | 166 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C+f+++tG CkyG+ C+F+H+
Seita.9G203700.1.p 141 PGEVDCSFYMKTGSCKYGSICRFNHP 166
57899********************9 PP
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| 3 | zf-CCCH | 27.3 | 6.4e-09 | 215 | 234 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS
zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27
f+++tG+Cky +CkF+H++
Seita.9G203700.1.p 215 FYMKTGFCKYSQKCKFHHPM 234
9*****************95 PP
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| 4 | zf-CCCH | 35.4 | 1.9e-11 | 265 | 288 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
e C f++r+GtC+yG+ CkF H+p
Seita.9G203700.1.p 265 EACAFYMRSGTCRYGAHCKFDHPP 288
78********************97 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 16.277 | 64 | 92 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.4E-7 | 64 | 91 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.16E-6 | 64 | 92 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.7E-10 | 67 | 91 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.1E-5 | 69 | 89 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.7E-6 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.788 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.0E-9 | 142 | 166 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.22E-5 | 144 | 168 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 146 | 165 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 10.183 | 207 | 235 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.7 | 211 | 234 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.1E-6 | 214 | 234 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 215 | 233 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.197 | 261 | 289 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.7E-6 | 261 | 288 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.58E-6 | 264 | 289 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.4E-5 | 265 | 286 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.7E-9 | 265 | 288 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MYWNRHPWLC GSDGVTVKDD GPGHRKSGWF LHEGGWLAPY QCQHSIEPPP FHSLITDSAI 60
LPVRPSEPVC SFYAKTGKCK FGANCKFNHP MPSVIAKETI YTATTDAAAH IGAADDLVPA 120
KMHAPTASSE AHNPKGLPIR PGEVDCSFYM KTGSCKYGSI CRFNHPYRPV VDIALMAPLV 180
QTTLPTPAPI MSAPMLNPAA NILQSFDFHV THVPFYMKTG FCKYSQKCKF HHPMNRSEPG 240
ANGNWDPEQP VTLTLAGLPR RESAEACAFY MRSGTCRYGA HCKFDHPPPQ EAISKLQAAG 300
KEDEEKKEGE AKEGSVVP*
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