PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G178900.1.p
Common NameLOC101754183, SETIT_036311mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 363aa    MW: 36026.1 Da    PI: 8.2221
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G178900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.82.7e-3943103262
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         +e+ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+
  Seita.9G178900.1.p  43 PEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 103
                         67899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027017.6E-3345101IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-2647100IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.60947101IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104985IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MASSTPVAAG DDAVGTRKGG TGGSGGAAPP PPATQQQQPP PPPEQGLRCP RCDSPNTKFC  60
YYNNYSLSQP RHFCKTCRRY WTKGGALRNV PVGGGCRKNK RSRSAAAAAA ASRLSLNLPV  120
EGVGGDQQAA RLGFLGATGG APVASSPIGG GGPAADYQQA AGGAVGMMAL PRLHALGVGQ  180
YVPFGEWPSG AGGDISGGGG GGHAMSGGGA HGGAVSSNIA SSIESLSFIN QDLHWKLQQQ  240
RLATMFLGPP PPPPPTSSAS HIDGAPAAAP AHIGGAFLQM AGPPGMESTM PAATSWFMDS  300
SYAVLPSPHA HANNTAAAAI TAAATTTNCN VGRSSGGDDD DAANCGSAIP SWGDMSTFAM  360
LP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G178900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9475244e-92EU947524.1 Zea mays clone 346044 mRNA sequence.
GenBankKJ7269774e-92KJ726977.1 Zea mays clone pUT3678 C2C2-DOF transcription factor (DOF32) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982507.10.0dof zinc finger protein DOF5.7
TrEMBLK4ABQ40.0K4ABQ4_SETIT; Uncharacterized protein
STRINGSi036311m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.11e-31Dof family protein