 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.9G170000.1.p |
| Common Name | LOC101760391, SETIT_037275mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
LBD |
| Protein Properties |
Length: 237aa MW: 24392.6 Da PI: 7.5047 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.9G170000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 94.5 | 1.1e-29 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++
Seita.9G170000.1.p 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTGNWD 92
6*********************9999888899*********************************************************** PP
DUF260 87 leqlkaelallk 98
l+q++a+++l++
Seita.9G170000.1.p 93 LCQAAADAVLRG 104
******998876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR 60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRGESSLRA LSTIPAAFKD 120
RDMDGLYGNV GAAAASSASP ENSSSTPSKK RRNNGGGGIA CFDAVRATGA CQQPPPAGLL 180
QSCELDLCLT PASPMAGGRR GCGASDEYSA TTTCEDLQAT GGDVEPRAPA LLNLFN*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK288002 | 1e-142 | AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence. |
