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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G166400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 332aa MW: 38041.8 Da PI: 9.591 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.9 | 3.4e-22 | 27 | 115 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffkv+ d +++ rl +p kf++++ g kt++le+++g +++v++ +k+ g++vl++GWk Fv a++Lk gDf+vF++dg+s+ Seita.9G166400.1.p 27 FFKVM--TDDFSE-RLGIPDKFVQHFRGR--IAKTVKLESRTGCTFNVEV--TKSLGKVVLQTGWKAFVCAHDLKMGDFLVFRYDGTSRL- 109 88999..777766.5********777766..6679***************..********************************996666. PP .EEEEE- CS B3 92 lvvkvfr 98 +v +f+ Seita.9G166400.1.p 110 -KVWIFD 115 .888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-25 | 20 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.82E-25 | 22 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.056 | 24 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.39E-24 | 25 | 115 | No hit | No description |
Pfam | PF02362 | 7.1E-20 | 27 | 115 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.8E-13 | 27 | 117 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MRKPGKKCKE RDAYHHWNHS DEQERYFFKV MTDDFSERLG IPDKFVQHFR GRIAKTVKLE 60 SRTGCTFNVE VTKSLGKVVL QTGWKAFVCA HDLKMGDFLV FRYDGTSRLK VWIFDLSCCE 120 KMPPCHVMRS PIRGGGKGEE QIEISRSCDD LPMESTEIKS KAWKQREGSM NLNTSSTSSS 180 DSSGDSLSPE DQKSHSVPSY ILPQRTYLTC VQKKKLKERV RAICSKTPIY GCVMKKSSID 240 AKPQTMVNQE ALFLDWTYQE NMLMYIFHSR TKHCCFNIVE RVGKWGVALI FTKAIPEPKG 300 FRKDGNSLLV TTICSWEISA SSSYWKTRST R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G166400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679255.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
TrEMBL | A0A368SHC7 | 0.0 | A0A368SHC7_SETIT; Uncharacterized protein | ||||
STRING | Si039093m | 1e-134 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G166400.1.p |