PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G166000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 385aa    MW: 43010.2 Da    PI: 6.6499
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G166000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.4e-19511311499
                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           +++p +fa++++g    s  ++l+++sg++W++ +  ++  ++++l++GWk+Fv+a+ + egD ++Fk++g s+f   v vf++
  Seita.9G166000.1.p  51 ETMSIPARFANNFNGH--ISEVVSLKSPSGKTWSIGV-GNNDTDEVFLQSGWKDFVSAHSIAEGDYLLFKYSGVSSF--DVLVFDS 131
                         569*******888666..6779***************.5666666***************************99999..8888876 PP
2B341.91.8e-13276375199
                         EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                  B3   1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                         f++v+ ps+v ++  g ++++ +fa+++ g  ++  +++l+  +   +W  +++ ++ s++ + ++GW +Fv +ngL + D+++F+l++  
  Seita.9G166000.1.p 276 FVQVMHPSHVRAQkpGVVSISSEFASKYLGAGRG--DIILRRvSIKGKWHARFTCNRFSRG-LTGRGWCGFVGDNGLLDHDVCLFELMKGq 363
                         778888999988877999**********444233..78888856669******88888877.6789********************99766 PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                         ++ +++v+v+rk
  Seita.9G166000.1.p 364 RRPTMTVHVLRK 375
                         999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-2335134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-2337137IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.07238132IPR003340B3 DNA binding domain
CDDcd100171.66E-1939130No hitNo description
SMARTSM010191.8E-1241132IPR003340B3 DNA binding domain
PfamPF023622.9E-1651130IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-17269374IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-17270374IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-10274374No hitNo description
PfamPF023628.2E-11276375IPR003340B3 DNA binding domain
SMARTSM010190.0026276376IPR003340B3 DNA binding domain
PROSITE profilePS508639.065278376IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MLSQGQGEPE GMQNLDKNCR VCMEWQEHCY WSHMADDQKH FFKPMVGGFA ETMSIPARFA  60
NNFNGHISEV VSLKSPSGKT WSIGVGNNDT DEVFLQSGWK DFVSAHSIAE GDYLLFKYSG  120
VSSFDVLVFD SSGCEKTSPH FAKNHGYERI EGSAGVEGAR RGSHKFKGGK DCTPQLLPSD  180
EDEDGDDDSD LELAVQKNTS KSISKSCKRK LYRDIEQVHC QVKSDEDDLE LDHEGDAPTG  240
YYFCKNGPVS DYHLTEEDRE EISSIRIPAQ STNPVFVQVM HPSHVRAQKP GVVSISSEFA  300
SKYLGAGRGD IILRRVSIKG KWHARFTCNR FSRGLTGRGW CGFVGDNGLL DHDVCLFELM  360
KGQRRPTMTV HVLRKVRGHF VLLR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G166000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982409.20.0B3 domain-containing protein Os03g0622200
SwissprotQ10GM31e-134Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A368SJ490.0A0A368SJ49_SETIT; Uncharacterized protein
STRINGSi040023m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-21B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]