PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G134000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 1550aa    MW: 168523 Da    PI: 4.062
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G134000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.3e-1110581080527
                          --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                          +Crf++ +G C+yG++C+F+H++
  Seita.9G134000.1.p 1058 NCRFYMLNGSCSYGSSCHFNHPQ 1080
                          7********************97 PP
2zf-CCCH29.41.4e-0911161139427
                          ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                          + C +++r+GtC+yG +C+F+H++
  Seita.9G134000.1.p 1116 RKCTYYMRNGTCRYGKKCCFNHPE 1139
                          67********************96 PP
3zf-CCCH22.52.1e-0712561281227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                           +++C+f +r+G Ck+ + C++ H++
  Seita.9G134000.1.p 1256 ERPECPFLQRFGNCKFESACQYYHPK 1281
                          689*********************96 PP
4zf-CCCH28.91.9e-0913261352127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                          +++++C+f+ +tG Ck+ + CkF+H++
  Seita.9G134000.1.p 1326 PGEPECPFYIKTGSCKFRADCKFHHPK 1352
                          5799*********************96 PP
5zf-CCCH21.54.2e-0714181444127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                          ++++ Cr+++++G Ck+ + C F+H++
  Seita.9G134000.1.p 1418 PGEPDCRYYMQFGKCKFQSACIFNHPK 1444
                          5789*********************96 PP
6zf-CCCH36.95.9e-1214511477127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                          ++ + C+f+++tGtC++G+ C F+H++
  Seita.9G134000.1.p 1451 WRPAACPFYMKTGTCQFGSACEFSHPK 1477
                          56789********************96 PP
7zf-CCCH185.2e-0615171542126
                          --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                          +++++C+++++ G+Ck+  +C F+H+
  Seita.9G134000.1.p 1517 PGEPECSHYMKHGYCKFQKSCIFHHP 1542
                          5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.2E-510531080IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.95710531081IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-510571080IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-810581080IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-510591079IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-511121139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.72311121140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-611151140IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-711161139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-511181139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.42212541282IPR000571Zinc finger, CCCH-type
SMARTSM003560.07412551281IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-412561281IPR000571Zinc finger, CCCH-type
SMARTSM003560.001213251352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.03313251353IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-413271352IPR000571Zinc finger, CCCH-type
SMARTSM003560.004714171444IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.85414171445IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-414191444IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-514491476IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-714501477IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.00914501478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-514511479IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-914511477IPR000571Zinc finger, CCCH-type
SMARTSM003560.02315161543IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13115161544IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1550 aa     Download sequence    Send to blast
MAGVEDEDEY KDALGAADPP PSSPSPTSKP KPAAAAGGGG GGLGRRLFAS IPLPASLSAA  60
IGRFSSPKPP APNVGLGLLL HAGPATPADG SGTPASDAAS AISSPHLPPL VSLQPQHGED  120
RVAGLGAGMG EEDLGLVPAE EQVWPTAEDR EKEGLAVDEC SANRNDFSLL GQEEGEQCQG  180
DELGTAVDGC MVQDQEEVVE QEGATEDCAA VVEDQSNNAA VEQCAGNETR AVKDDNAVEV  240
NEKVTEQEGA VSILDAAEDG VAVASQEEEE DVVVAEQGED VISVQDQLEV VELCTGDQLR  300
TTTEDNAGRD QDLVKQEEAT EYYTTLEAVE QCTNDGSKEV KDGNIVEEVE RAVELEGAPG  360
LLDAAKDGTP VELQEEDVVV AEQEEDEDVI SVQDQHKVVD QCSGDQLITA TDDNAAQDQD  420
VMKHEGATEY YIAVEAVEQC TNDGSRAVKD GNVVEEKDKV AEQVVAVGIL YAAKDCATGE  480
SQEEGDVVVA EQSEDSISVQ DQHKVVELFT GNQLKASADD NAAQDQEVLE QEGATEYYTT  540
LEAVEECTND ESRVAKDGNV VEEKERPVKQ EGAVGVLNAA KDDIIVELQE EDVMVAEQCE  600
GDIFVHNQDK VVELCTSGQI KTTVVDNAAE GQEVVEEECA IVDRDVATDD IAVEDQEKEV  660
KQSAGDESRA TKDGNAVEVN EKMVDQEDVI DKHGVIKDGN GVVLLEENIV VVVEQGGDAM  720
SLPDVSNVVE QYTIDQPRAT TDDNAAENQE IGEQGAVVER VVTTDGIDIE DQEKEVEHSS  780
GDELTSTKNE NGVEDNEKVD QEDIIDKQGV IKDGSGVDSQ EEDVVVTEQG GDGISVRDVG  840
NVKQYTSDQR TTMEDNVVEC QEVVEKEGSI FERGATAGGT TVEDQDKEVE QSAGDESRAT  900
NDENGVEDAT DKQGTAKDGS GVESQEDEDV VPAEQGGDDI SVRDEGNVME QCTSDQQRTT  960
PDDNAAEDQE VVEQEGVVSI LGAAKVDIAV ESLQEEDIVV ADQVEDGVSV QDQDKVVEQC  1020
TSDQLRTSTY GYAEEDQEAR RENIGFSAGY PQRPGKLNCR FYMLNGSCSY GSSCHFNHPQ  1080
LKAKLEVSNF PSEQRNREVE FLELNRVGLP IREGARKCTY YMRNGTCRYG KKCCFNHPEQ  1140
VLDAQLHMPT GWDDTNLQSS PHSKKSTEHA TINDVSSGSE ILPSEILPPN GSEILPPNIL  1200
RMLLPPQNVP PCTEEKEMKV KKDPDWSSAS DDSDGCCSAD SSGGPLCKQE HVDYPERPEC  1260
PFLQRFGNCK FESACQYYHP KDKFPSRHHP KDKFPSRYHS KDKFQSRYLP KRDPPLAELK  1320
VYPDRPGEPE CPFYIKTGSC KFRADCKFHH PKDLTPSMQG SASPKRSVAA NEHHPAARIP  1380
SMQGAASPKR LVANEHHPAA RIMLQDHMYQ QQKCPERPGE PDCRYYMQFG KCKFQSACIF  1440
NHPKDILSSG WRPAACPFYM KTGTCQFGSA CEFSHPKDRC ATTGEAIDDG TDNEHDFDTK  1500
SENVLQQQEK TIYPQRPGEP ECSHYMKHGY CKFQKSCIFH HPTDHLSNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G134000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982130.30.0uncharacterized protein LOC101775251
TrEMBLA0A368SGC10.0A0A368SGC1_SETIT; Uncharacterized protein
STRINGSi033903m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-35floral homeotic protein (HUA1)