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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G128700.1.p | ||||||||
Common Name | SETIT_034386mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 754aa MW: 80599.6 Da PI: 6.9632 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.7e-07 | 309 | 329 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Seita.9G128700.1.p 309 PCPDFRK-GVCRRGDMCEYAHG 329 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00204 | 4.66E-8 | 53 | 169 | No hit | No description |
SuperFamily | SSF48403 | 1.46E-14 | 91 | 169 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.24 | 91 | 121 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 6.3E-10 | 91 | 160 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.547 | 91 | 166 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.1E-16 | 92 | 170 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 12.85 | 126 | 161 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.026 | 126 | 158 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.1E-5 | 304 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 308 | 331 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.375 | 309 | 331 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 309 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 337 | 367 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 339 | 362 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 754 aa Download sequence Send to blast |
MMNSMPISAS PAAGVDGGPL AAGTPRKNAT AAAAVAEMAR HLTVDTDDAF AGLLELAADD 60 DAEGLRRALE RAPPAAADEA GLWYGRRKVL EHRTPLMVAA TYGSLAALRL LVSLPSVDVN 120 RRSGTDGTTA LHCAASGGSR TAVEAVKLLL GAGADADATD DSGRRPADVI SVLPKMFDAK 180 FALQDLLGCP KSEHGMLRVV TRSTNWISSP VSSPTAEDAR SPSAAVMMTT KFADLPRVAT 240 SEKKEYPVDP SLPDIKNSIY ASDEFRMYSF KIRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PDFRKGVCRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CNRRVCFFAH 360 TTDELRPLYV STGSAVPSPR ASATAAMEMA AAMGLMPGSP SSVSAVMSPF TPPMSPSGNG 420 MPPSLGWQQP NVPTLHLPGS SLQSSRLRTS LSARDMPADD YSLMQDLDSQ LMNDLCYSRL 480 SSSTGNHSAR TKSLNPSNLD DLFSAEMVSS PRYSNADQGA MFSPSHKAAI LNQFQQQQQA 540 LLSPINTGVY SPKAVDNQQL PSHSSLLQAS LGMSSPGRMS PRCVESGSPM NSHLAAALVQ 600 REKQQQQQQQ QTMRSLSSRD LGPSAARASA LVGSPLSSSW SKWGSPSGTP DWGVNGEELG 660 KLRRSSSFEL RSGGDDPDLS WVHTLVKESP PEKQVTMAES INSVGPSPLM PPGMNNSEGS 720 GLNTQLDGHD QAAVIGALLE QMQLDQQVGS LAT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G128700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982091.1 | 0.0 | zinc finger CCCH domain-containing protein 24 | ||||
Swissprot | Q10EL1 | 0.0 | C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A368SG50 | 0.0 | A0A368SG50_SETIT; Uncharacterized protein | ||||
STRING | Si034386m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G128700.1.p |
Publications ? help Back to Top | |||
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