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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.9G119800.1.p |
Common Name | LOC101760269, SETIT_035937mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
CO-like |
Protein Properties |
Length: 407aa MW: 44451.2 Da PI: 7.1284 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.9G119800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 23.1 | 1.6e-07 | 17 | 60 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
+r C+ + + +++++C ++ +lC+ C ++ H+ H+v
Seita.9G119800.1.p 17 ARSCDGCMRRRARWHCPADDAFLCQACDTSVHSAnplarrhHRV 60
678*****************************668888886655 PP
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2 | CCT | 67.2 | 4.5e-23 | 322 | 365 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
Seita.9G119800.1.p 322 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 365
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MTNAGAATGA VLGARTARSC DGCMRRRARW HCPADDAFLC QACDTSVHSA NPLARRHHRV 60 RLPSASCSSP PRDPDAPAWL HGLKRRPRTP RSKPGVSKHE TTPASIAAAV SAAVPDLEAE 120 ESAGSGIVGD NDYHGLEEDD EDLLYRVPVF DPMLAELYNP VADEGEQKPA ACLISSLAET 180 SPEFASGLAE ADGLSGYDVP DMELASFAAD MESLLMGVDE GFDDLGFLDE EKPQVNVDLG 240 SMNLETMAVP APERDDKKRK RPEMILKLNY DGVIASWARD GGSPWFHGER PHLDPHESWS 300 DFPAGSRGLL GGTVTAVTGG EREARVSRYR EKRRTRLFAK KIRYEVRKLN AEKRPRMKGR 360 FVKRSSLPPL PRPPPPPSQQ QQPRAMMPHV GMVLAPPLGA HGRFRF*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 82 | 88 | LKRRPRT |
2 | 332 | 348 | RRTRLFAKKIRYEVRKL |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727843 | 0.0 | KJ727843.1 Zea mays clone pUT5887 C2C2-CO-like transcription factor (COL8) mRNA, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 4e-63 | B-box type zinc finger protein with CCT domain |