PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G108200.2.p
Common NameLOC101752968, SETIT_036678mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 318aa    MW: 34877.9 Da    PI: 5.4038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G108200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-10148196355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Seita.9G108200.2.p 148 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 196
                         58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.55E-17143212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-11143200No hitNo description
PROSITE profilePS5088815.447145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16145212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-8148196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MYSGQQSDQG PSANSGREFS EANWNSVTMH QKMGYNSGPY GFGPYSMGLE ERPGLYQSSS  60
GTFSQNIQMS DEHSGGVKKR KGMDDCVGLL QNAGDQQTEG SSQPERNSME EGNRKISPKM  120
QSKEDSSDGD GTKEDYVHIR AKRGQATNSH SLAERLRRKK ISERMKLLQD LVPGCSKITG  180
KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PELGFDIEQI LSQQMMLSQD RHFAIYGADP  240
GSSSLAAQFN QGIMQPEIMC NISNPVDVLQ GTIHDVSTMN QIPAMWEGLQ NLPQMNFNPG  300
VAAGSSTNNS GSMKIEQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G108200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353480.0BT035348.1 Zea mays full-length cDNA clone ZM_BFb0057A01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981901.10.0transcription factor bHLH49
RefseqXP_004981902.10.0transcription factor bHLH49
RefseqXP_022678584.10.0transcription factor bHLH49
SwissprotQ6NKN92e-52BH074_ARATH; Transcription factor bHLH74
TrEMBLK4ACS80.0K4ACS8_SETIT; Uncharacterized protein
STRINGSi036685m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]