PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Seita.9G084000.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 331aa MW: 33926.2 Da PI: 8.3697

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G084000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00053	166	211	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 a n+r r R +++ +++ L++l+ + +K + a++L +A YI+ L Seita.9G084000.1.p 166 ATNKRPRVRKEKLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 211 679********************98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.163	162	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-12	165	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-8	166	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.35E-4	168	216	No hit	No description
SMART	SM00353	0.003	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MVKEEEIVAE AGGRGYMDLL GLGGEDYLLC MSPSSYFSSS VVSTATTTSA TPAAASSPTC 60 SSYLDLAPAY HQMLSFAGQG QYHGGDGIFG LQYYGGDQAI PMAVPVPQKS SPTTECSSSI 120 SSMSSSPPAT TVSAISSPKP QAFKKKGSRS SGQRKAAPAA VATTAATNKR PRVRKEKLGE 180 RIIALQQLVS PFGKSDTASV LHEALGYIRF LHDQVQALSS PYMQQRQPVS AHAPLCSYSA 240 AALWQAPESA AGTVVEPPRP TSDLRSRGLC LVPIACTEHV AGGVHGHGHG NGADLWSVAA 300 GMAKAAAENK AAAAVGALPG GGHGHHGHLA *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G084000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012704673.1	0.0	transcription factor bHLH113 isoform X1
TrEMBL	A0A368SEK2	0.0	A0A368SEK2_SETIT; Uncharacterized protein
STRING	Si036666m	1e-154	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8082	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	2e-26	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.9G084000.1.p