PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G069700.1.p
Common NameLOC101786033, SETIT_036447mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 345aa    MW: 38686.4 Da    PI: 6.7862
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G069700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-51361642128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp ++++++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++
  Seita.9G069700.1.p  36 LPGFRFHPTDEELVTFYLRRKVARKPLSI-EIIKEMDIYKHDPWDLPkASTAGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRP 125
                         69***************************.89***************556667899*********************************** PP

                 NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s+  +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Seita.9G069700.1.p 126 IYSAanSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 164
                         **99888899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-5635191IPR003441NAC domain
PROSITE profilePS5100555.98435191IPR003441NAC domain
PfamPF023655.3E-2537164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVAKEFGREV MSMDKVKTDG EALIAAGDEE EDDVVLPGFR FHPTDEELVT FYLRRKVARK  60
PLSIEIIKEM DIYKHDPWDL PKASTAGGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT  120
GIDRPIYSAA NSGESIGLKK SLVYYRGSAG KGTKTDWMMH EFRLPPAATA ANASPSMQEA  180
EVWTICRIFK RNITYRRQQP QQVWRQPAAA SNALPPTDSS SNTGSGFESD GGDEYMNCLP  240
ASAPSAPRQL HFSNQINMLN GGGGFFRESG VHNQQFQGQW FNSIPAPAAV EQKPQLNSPA  300
MTIAFHQNDQ SLAANDFCKD GYWDEIARFM EVNDPTVFYD CRYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-483719219166NO APICAL MERISTEM PROTEIN
1ut4_B1e-483719219166NO APICAL MERISTEM PROTEIN
1ut7_A1e-483719219166NO APICAL MERISTEM PROTEIN
1ut7_B1e-483719219166NO APICAL MERISTEM PROTEIN
3swm_A2e-483719222169NAC domain-containing protein 19
3swm_B2e-483719222169NAC domain-containing protein 19
3swm_C2e-483719222169NAC domain-containing protein 19
3swm_D2e-483719222169NAC domain-containing protein 19
3swp_A2e-483719222169NAC domain-containing protein 19
3swp_B2e-483719222169NAC domain-containing protein 19
3swp_C2e-483719222169NAC domain-containing protein 19
3swp_D2e-483719222169NAC domain-containing protein 19
4dul_A1e-483719219166NAC domain-containing protein 19
4dul_B1e-483719219166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G069700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0735390.0AK073539.1 Oryza sativa Japonica Group cDNA clone:J033041C24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981565.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK551e-82NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLK4AC400.0K4AC40_SETIT; Uncharacterized protein
STRINGSi036447m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-81NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]