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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.9G067200.1.p |
| Common Name | LOC101775649, SETIT_035819mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
bHLH |
| Protein Properties |
Length: 429aa MW: 45940.3 Da PI: 6.2997 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.9G067200.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 53.8 | 3.5e-17 | 236 | 282 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn ErrRRdriN+++ L+el+P++ K +Ka+iL +++eY+ksLq
Seita.9G067200.1.p 236 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDETIEYLKSLQ 282
6*************************8.....6******************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0006783 | Biological Process | heme biosynthetic process |
| GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway |
| GO:0009959 | Biological Process | negative gravitropism |
| GO:0010100 | Biological Process | negative regulation of photomorphogenesis |
| GO:0010161 | Biological Process | red light signaling pathway |
| GO:0010187 | Biological Process | negative regulation of seed germination |
| GO:0015995 | Biological Process | chlorophyll biosynthetic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0010313 | Molecular Function | phytochrome binding |
| GO:0042802 | Molecular Function | identical protein binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 429 aa
Download sequence Send
to blast |
MDGNARPAAN QRKPIVTDDD LVELLWHNGG VVAQPQAHQR PAPSERLDSS GLTDEETAAW 60
FPDTLDDSLE KDLYTQLWYS TIADAAPHHG GTLPGPSSQP PPPPPELAHP ARPPVGSSGV 120
ESSWAGDICS TFCGSNQVPM TPAGINRGKD AALQSEVPRG AGAHDGAGAG TSSSGGSGSN 180
YGGSGLPSDS GRVQKKMGRC RDDSDSQSED AECEATEETK SSRRCGTKRR TRAAEVHNLS 240
ERRRRDRINE KMRALQELIP HCNKTDKASI LDETIEYLKS LQMQVQIMWM TSGMAPMMFP 300
GAHQFMPPMA LGMTSACIPA AQGLNQMPRV VPYMNLPLPN HIPLNSSPAM NPMNSLSVSN 360
QMQNVHLREA SNHFIHPDGR QTVVPQVPGT HVYGPEIPQA EHNRVLEVPA STVVPTSSAG 420
QPHTYGGV*
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| Nucleic Localization
Signal ? help
Back to Top |
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| No. |
Start |
End |
Sequence |
| 1 | 227 | 244 | KRRTRAAEVHNLSERRRR |
| 2 | 240 | 245 | ERRRRD |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
[PMID:17485859] - Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
N Biotechnol, 2011. 28(6): p. 788-97
[PMID:21549224] - Todaka D, et al.
Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52
[PMID:22984180]
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