PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G055600.1.p
Common NameSETIT_035062mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 416aa    MW: 42907.6 Da    PI: 4.7408
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G055600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.92.2e-13224275556
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                         + +rrkq+NRe+ArrsR RK a + eLe  v++L  eN++L  +l   +++ 
  Seita.9G055600.1.p 224 RLQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQKF 275
                         679**************************************98887777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-15220284IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.254222277IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.8E-10223276No hitNo description
SuperFamilySSF579591.81E-9224273No hitNo description
PfamPF001704.1E-10224273IPR004827Basic-leucine zipper domain
PfamPF124984.3E-49291408IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MERVFSVEEI PNPYWTPTQP QAAAAGAVAA PGGGGGGGGA GGAGDEVGAM NRCSSEWYFQ  60
KFLEEAVLDS PGPVPGVGRG GGGVGVGVEA AESKPLGVGA ASNAVVDPVE YNAMLKQKLE  120
KDLAAVAMWR ASGATPPERP AAGSSLPNVD VSHAGPVNPI GGNVIPVQNK LAGAPGGPSG  180
PQVVQNADML VKQATSSSSR EQSDDDDMEG EAETTGNANP VQQRLQRRKQ SNRESARRSR  240
SRKAAHLNEL EAQVAQLRVE NSSLLRRLAD VNQKFNEAAV DNRVLKADVE TLRAKVKMAE  300
DSVKRVTGMN ALFPPVSDMS SLSMPFNGSP SDSTSDAAVP VQDDPSSYFA SPSEMGGNGG  360
YMPEIASSAQ EDDDLVNAAL AAGKMGRTAS LQRVESLEHL QKRMCGGPAS SGSTS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G055600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981429.10.0bZIP transcription factor RISBZ2 isoform X1
RefseqXP_022679227.10.0bZIP transcription factor RISBZ2 isoform X2
SwissprotQ7X9A80.0RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLA0A368SDG20.0A0A368SDG2_SETIT; Uncharacterized protein
STRINGSi035062m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34883878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.27e-47bZIP family protein
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]