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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.9G053700.1.p |
Common Name | SETIT_040171mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
WRKY |
Protein Properties |
Length: 403aa MW: 42724.8 Da PI: 9.4525 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.9G053700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 93.9 | 1.1e-29 | 329 | 387 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++d ++++tYe++Hnh
Seita.9G053700.1.p 329 ADNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVERCRSDAGMLIVTYENDHNHA 387
69**************************99****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 403 aa
Download sequence Send
to blast |
MEVVEEANRA AVESCKKLVA FLSLSAGDPF RPMPVAVETD EAVAGFGKVV AVLSDRLGHA 60 RARVGKRSLA PPVDASCLLD HPSMAPRHPP NSSHLVSSTP AAAAPPPPTT AAMRSVAPLM 120 RSHEAEVAPA VMVSPCANVA LAPAPAAAAR KFDRNMFLET PLLELNSYSV LPSTAPMAAV 180 PKSTSTVVTV PSPNPCTTIS THIQFQPQQA KKQKSFQFDQ TPSGEQFHIE VPVPLPRGGG 240 GAKEVISFSF DNNSVCTSSA ATSFFTSISS QLISMSDAAT SSAATAKKAC AKRGEDGSVK 300 CHCPKKKKPR EKRVVRVPAI SDKNADIPAD NYSWRKYGQK PIKGSPHPRG YYRCSSKKDC 360 PARKHVERCR SDAGMLIVTY ENDHNHAQPL DPSVLTATAA EA*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC243252 | 0.0 | AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence. |