PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G043000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 363aa    MW: 37962.6 Da    PI: 7.3677
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G043000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_175.66.6e-24254316163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv  L+a N aL++el++lkk ++ +k+e+
  Seita.9G043000.1.p 254 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAINGALRSELDQLKKACEDMKAEN 316
                         89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-17250314No hitNo description
SMARTSM003382.1E-21254318IPR004827Basic-leucine zipper domain
PfamPF001701.1E-21254316IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.76256319IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-10257313No hitNo description
CDDcd147026.52E-19259309No hitNo description
PROSITE patternPS000360261276IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MVSSASKSSG DERPSGAPGD PSPGAGTTAP LQGHAEWAAS MQAYYAAGGQ PYAWHAAQGR  60
ADQHMMAAAA AAAAGAAPPY GAPVPFPVSF HPAYYAHAAM ATGVPYTAGE PVAAAEGKNK  120
RKSSGAPSVG SASGSSDAGR EESSDKRDAS ADLKLLPSAK RRKSSSANVQ GEPSQAATTQ  180
DAAAETQSAS KRRSAAKLSV STPETAAISE TRPNLNIGMD LWSNSPVKAE TSGQGEINAA  240
ASSQHDITLS QMDERELKRE RRKQSNRESA RRSRLRKQQE CEELAQKVTD LTAINGALRS  300
ELDQLKKACE DMKAENSQLM GEMEQSEAPS VVTTLSIQID TSKAHHGNND QHHNKNNNDN  360
KG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270276RRSRLRK
2270277RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G043000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981331.10.0DNA-binding protein EMBP-1 isoform X2
SwissprotP250329e-76EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A368SCZ70.0A0A368SCZ7_SETIT; Uncharacterized protein
STRINGSi039367m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.11e-27basic region/leucine zipper transcription factor 68