PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G019300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 369aa    MW: 40012.8 Da    PI: 6.1881
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G019300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.11.9e-07129151123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cgk F+r  nL+ H+r H
  Seita.9G019300.1.p 129 HSCKVCGKGFKRDANLRMHMRGH 151
                         79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-5127154No hitNo description
Gene3DG3DSA:3.30.160.601.9E-6129155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0017129151IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.321129156IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
SMARTSM0035544182215IPR015880Zinc finger, C2H2-like
SMARTSM0035527220242IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEVCSNLEGA TETHQQQDDP RTLLTYLTFL EQKIAHLRGI ICSAPRPPRQ IVSAELSCIA  60
VQLVSISKSL AAASGATAEE AAASPNEGDS DSSDRDLHAE EDDDDRLPPA GSYEVIELGK  120
EEILAPHVHS CKVCGKGFKR DANLRMHMRG HGEEYKTAAA LAKPATGRDA PPPPGAAARC  180
LYSCPFVGCK RNREHRSFQP LKTAVCVKNH YRRSHCDKSY TCRRCNVKRF SVLADLRTHE  240
KHCGRDRWVC SCGTSFSRKD KLFGHVAAFD GHAPALPPEE DDHSAANGHG SASDQLLMDT  300
EAVSRMASTE CFSDSMFDGL SCSDIKGFAL NVDGQCLDEG RGSLSPMDLY SCDYPGFDLF  360
GAPGIADF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G019300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-144CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986133.20.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A368SCF30.0A0A368SCF3_SETIT; Uncharacterized protein
STRINGSi036555m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.36e-92C2H2 family protein