PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G018200.1.p

Common Name

SETIT_039612mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 327aa MW: 35849 Da PI: 4.9119

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G018200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	33.9	9e-11	25	125	32	127
NAM 32 evikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgk....rknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115 +++++vd++++ P+dL + + + +++ wyf++ ++ k+++g+ r++ a+++ W++ kev+ +e g+ L + +++ ++ Seita.9G018200.1.p 25 HFVHHVDVCSAAPKDLVAdlEPAPGTSIWYFYCVKKYKSTHGRpgghRQRAiAASDTCWHSEAGAKEVKG--SEGGGTVCNLSYGRKDGRS 113 4699**********852333347789****9999644444266556677999******88..66689999*999999 PP NAM 116 gektdWvmheyr 127 ++ W+m ey Seita.9G018200.1.p 114 FSRLGWCMMEYD 125 9********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	16.104	1	141	IPR003441	NAC domain
SuperFamily	SSF101941	5.89E-15	21	141	IPR003441	NAC domain
Pfam	PF02365	1.1E-4	43	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MAAEDTGDDA SIALLHRLRA GATVHFVHHV DVCSAAPKDL VADLEPAPGT SIWYFYCVKK 60 YKSTHGRPGG HRQRAIAASD TCWHSEAGAK EVKGSEGGGT VCNLSYGRKD GRSFSRLGWC 120 MMEYDDATGG GDYVLCKIYR SPRAQVKPSS AASKTAKRKA GGEHPEARPA KLFHEQDTFF 180 FTDDYAVPST VAQVNVGGEE EQHCRSMLPA EEHCVDLDFL DHDVLPLTDD EMAMLESLLP 240 AEEQQFLQHN TQPPLPAEEQ QFLQHNTQSL LAAEEQQFQF EDSTQFTIGK LLGDDVNVYE 300 FMISRCCGTP TAMAPPDAGF FHGLAF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G018200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A368SC59	0.0	A0A368SC59_SETIT; Uncharacterized protein
STRING	Si039612m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4574	6	32

Link Out ? help Back to Top
Phytozome	Seita.9G018200.1.p