PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRAS

Protein Properties

Length: 819aa MW: 89535.3 Da PI: 4.8703

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G250000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	340.8	2.4e-104	437	810	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++ L++cA+ v++gd + +lL ++++++sp+gd++qRla++f+e+L+arla+++s++y++l +++ts +++ l+a+kl+ ++ ++ Seita.8G250000.1.p 437 LRTMLIHCAQSVATGDRRSGIELLRQIKQHSSPKGDATQRLAHCFAEGLEARLAGTGSQVYQSLVAQRTS---VVDFLKAYKLYMVACCYM 524 5789************************************************************9999...************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k+ + +I +av+g +++Hi+ +++++G+Q+p Ll +La+R++gpp++R+T+++ p++g ++++eetg+rL++ A+elgvpf+fn+ Seita.8G250000.1.p 525 KVKFTFSTATICNAVAGRSKLHIVEYGVQHGFQYPGLLYTLAKRKGGPPEVRVTAIAVPQPGfrPAHQIEETGHRLSNCARELGVPFKFNA 615 **********************************************************99************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 + ++e+++ ++L+++p+E+l+Vn+ +l+desv ++s +rd vL+ +++++P+v++++ + +++ Fl+rf eal +ysa fd Seita.8G250000.1.p 616 -ILAQWETVRAKDLNIDPEEVLVVNSECFWGNLMDESVLVDSpsPRDMVLNNIREMRPNVFIHSVVNGTFGAPFFLTRFREALFFYSAQFD 705 .6999****************************98877779****************************************** PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 +l+a++pr+++er +Er ++gr++ nv+acega+r+er et+++W r ++aG++++pl+++aak + +++++ + + ++e++ +l+l Seita.8G250000.1.p 706 MLDATIPRDNDERLLIERDVIGRSALNVIACEGADRVERPETYKQWLVRNHRAGLRQLPLDSEAAKVSRDKVKNYYHRDFLIDEDNRWLLL 796 ************************************************************************999******** PP GRAS 361 gWkdrpLvsvSaWr 374 gWk+r L+++S+W+ Seita.8G250000.1.p 797 GWKGRVLYAMSSWT 810 ***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.639	411	790	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.1E-102	437	810	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
MSATPEEFLG QGAYLAAPEP FSPSVFLDLP PTPRPDADDP DASDDLVLPF ISRMLMEEDI 60 DDKFFYQFPD HPALLNAQQP YAQILSDTTA SSSSDSAATN TTSSGTAANS TLSPPSSDAP 120 SSAEPAWPYD SIELSQLLRS PPYPDMGVGL DDFTADDVDA LLLQGRQEGA TAGFHQSPPV 180 LDTGGGGGGQ RQGASLATQN AGSGESQRPR ASLAAQNAAG DGSQRQRDSF AAQNAGGGAG 240 IRSLPADEQE TKTANATALP AADTDHAALA SAFFGAQNGE NMDMLNMAFL KGMEEAKKFL 300 PTNNSLLMDL EANSGQSTDS KPVTGFTAAR VKEEEVVDGM LLFGGGTTNG RGRKNRYTQE 360 DLEAETGRSS KLMMPEQEET GASELYSEIM SLNYEEFMKR MSDLRIAMDS ESEKSARKVS 420 GKKGARGRQR ADEVVDLRTM LIHCAQSVAT GDRRSGIELL RQIKQHSSPK GDATQRLAHC 480 FAEGLEARLA GTGSQVYQSL VAQRTSVVDF LKAYKLYMVA CCYMKVKFTF STATICNAVA 540 GRSKLHIVEY GVQHGFQYPG LLYTLAKRKG GPPEVRVTAI AVPQPGFRPA HQIEETGHRL 600 SNCARELGVP FKFNAILAQW ETVRAKDLNI DPEEVLVVNS ECFWGNLMDE SVLVDSPSPR 660 DMVLNNIREM RPNVFIHSVV NGTFGAPFFL TRFREALFFY SAQFDMLDAT IPRDNDERLL 720 IERDVIGRSA LNVIACEGAD RVERPETYKQ WLVRNHRAGL RQLPLDSEAA KVSRDKVKNY 780 YHRDFLIDED NRWLLLGWKG RVLYAMSSWT AEDNKPLF*

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

MSATPEEFLG QGAYLAAPEP FSPSVFLDLP PTPRPDADDP DASDDLVLPF ISRMLMEEDI  60
DDKFFYQFPD HPALLNAQQP YAQILSDTTA SSSSDSAATN TTSSGTAANS TLSPPSSDAP  120
SSAEPAWPYD SIELSQLLRS PPYPDMGVGL DDFTADDVDA LLLQGRQEGA TAGFHQSPPV  180
LDTGGGGGGQ RQGASLATQN AGSGESQRPR ASLAAQNAAG DGSQRQRDSF AAQNAGGGAG  240
IRSLPADEQE TKTANATALP AADTDHAALA SAFFGAQNGE NMDMLNMAFL KGMEEAKKFL  300
PTNNSLLMDL EANSGQSTDS KPVTGFTAAR VKEEEVVDGM LLFGGGTTNG RGRKNRYTQE  360
DLEAETGRSS KLMMPEQEET GASELYSEIM SLNYEEFMKR MSDLRIAMDS ESEKSARKVS  420
GKKGARGRQR ADEVVDLRTM LIHCAQSVAT GDRRSGIELL RQIKQHSSPK GDATQRLAHC  480
FAEGLEARLA GTGSQVYQSL VAQRTSVVDF LKAYKLYMVA CCYMKVKFTF STATICNAVA  540
GRSKLHIVEY GVQHGFQYPG LLYTLAKRKG GPPEVRVTAI AVPQPGFRPA HQIEETGHRL  600
SNCARELGVP FKFNAILAQW ETVRAKDLNI DPEEVLVVNS ECFWGNLMDE SVLVDSPSPR  660
DMVLNNIREM RPNVFIHSVV NGTFGAPFFL TRFREALFFY SAQFDMLDAT IPRDNDERLL  720
IERDVIGRSA LNVIACEGAD RVERPETYKQ WLVRNHRAGL RQLPLDSEAA KVSRDKVKNY  780
YHRDFLIDED NRWLLLGWKG RVLYAMSSWT AEDNKPLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-38	421	810	1	378	Protein SCARECROW
5b3h_D	5e-38	421	810	1	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G250000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980079.1	0.0	scarecrow-like protein 34
TrEMBL	K3ZHD3	0.0	K3ZHD3_SETIT; Uncharacterized protein
STRING	Si025985m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-145	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Seita.8G250000.1.p
Entrez Gene	101770251