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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.8G247200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 188aa MW: 20383.7 Da PI: 7.8481 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 128 | 150 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg Fs+ L H+r+H Seita.8G247200.1.p 128 HACGTCGLGFSTGQALGGHMRRH 150 67********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.4E-9 | 88 | 113 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.74E-7 | 88 | 150 | No hit | No description |
PROSITE profile | PS50157 | 11.24 | 89 | 116 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.99 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.7E-9 | 127 | 152 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.138 | 128 | 155 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.93 | 128 | 150 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 130 | 150 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MKRGRDDAIA AMGDDNNDRY PLGEEDEDGV EEEDRHQQRA ACDVLLSLSC GSSSGSSSTS 60 GEEEAAGTAA VPPLNKRLRR RRRGRDDAFE CRTCGRKFMT FQALGGHRSS HLRRPPATKL 120 RPKEVAVHAC GTCGLGFSTG QALGGHMRRH RGPTTTEDDF GYVGLPQIIM QQDRPSSASL 180 PLLNLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.8G247200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012703899.1 | 1e-135 | zinc finger protein ZAT11 | ||||
TrEMBL | A0A368SBB6 | 1e-134 | A0A368SBB6_SETIT; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 1e-21 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.8G247200.1.p |