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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.8G241200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 221aa MW: 24921.4 Da PI: 8.9789 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 28.9 | 3.7e-09 | 85 | 171 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnH 87 fY +YA+ + F v++ ++kk +r ++Cs+e k + k ++ + r++++ +t+Cka+lk ++ + + ++k +l HnH Seita.8G241200.1.p 85 FYMRYAQLAEFGVKMCNKKKF-------SRVMRCSCERKGDFYKGDEALRVRNKTTMKTKCKAHLKFTRVYdsegnEVDMIIEKANLFHNH 168 9*************9987776.......566777777777777777679999***************998864332334678889999*** PP FAR1 88 ela 90 l Seita.8G241200.1.p 169 LLH 171 885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.9E-5 | 85 | 170 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MLESSNTGFR TLPTQIGCQQ GSNEDQTITT GRQGVVFSPP DTLNANQMIA SEEEIPPQTH 60 NESMDPNMVP REGMSFHTEA EAKAFYMRYA QLAEFGVKMC NKKKFSRVMR CSCERKGDFY 120 KGDEALRVRN KTTMKTKCKA HLKFTRVYDS EGNEVDMIIE KANLFHNHLL HTPLKTKKMR 180 SHKSTKLEAG VSTQSIKNVL QNMHGGAELV PITSRDIENM * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.8G241200.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A368SB38 | 1e-165 | A0A368SB38_SETIT; Uncharacterized protein | ||||
STRING | Si027404m | 1e-143 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7609 | 10 | 43 |
Link Out ? help Back to Top | |
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Phytozome | Seita.8G241200.1.p |