PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.8G240600.1.p

Common Name

SETIT_027404mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 281aa MW: 31714.9 Da PI: 7.5031

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G240600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.6	1.1e-09	158	244	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnH 87 fY +YA+ + F v++ ++kk +r ++Cs egk + k ++ + r++++ +t+Cka+lk ++ + + ++k +l HnH Seita.8G240600.1.p 158 FYMRYAQLAEFGVKMCNKKKF-------SRVMRCSYEGKGDFYKGDEALRVRNKTTMKTKCKAHLKFTRVYdsegnEVDMIIEKANLFHNH 241 9***********9987776.......8899******999999999************998864332334678889999* PP FAR1 88 ela 90 l Seita.8G240600.1.p 242 LLH 244 885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-5	158	243	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGCRRILFEE AGPSAPSRDS ADSPSPKRLE MNDMRVAVDV RNTEVPERSP PRSEPSQLGE 60 RDTIDFCIKV PEMLESSNTG FRTLPTQIGC QQGSNEDQTI TTGRQGVVFS PPDTLNANQM 120 IASEEEIPPQ THQNESMDPN MVPREGMSFH TEAEAKAFYM RYAQLAEFGV KMCNKKKFSR 180 VMRCSYEGKG DFYKGDEALR VRNKTTMKTK CKAHLKFTRV YDSEGNEVDM IIEKANLFHN 240 HLLHTPLKTK KMRSHKSTEP EAGMSTQKLV PITSRDIENM *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G240600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	K3ZLE7	0.0	K3ZLE7_SETIT; Uncharacterized protein
STRING	Si027404m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Link Out ? help Back to Top
Phytozome	Seita.8G240600.1.p